IL_8GLP_191

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8GLP|1|S2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_191 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.0842

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8GLP|1|S2|G|41
8GLP|1|S2|A|42
8GLP|1|S2|U|43
8GLP|1|S2|U|44
8GLP|1|S2|A|45
8GLP|1|S2|A|46
8GLP|1|S2|G|47
*
8GLP|1|S2|C|479
8GLP|1|S2|G|480
8GLP|1|S2|C|481

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SX

40S ribosomal protein S23 (uS12)