Motif IL_88488.1 Version IL_88488.1 of this group appears in releases 3.18 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3TZR_001 | 3TZR | 0.6147 | 4 | Major groove intercalation | A+B | RNA (20-mer) + RNA (16-mer) | G | 52 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | ncWS | cWW |
| 2 | IL_1U9S_002 | 1U9S | 0.0000 | 2 | Major groove intercalation | A | RIBONUCLEASE P | G | 111 | A | 114 | G | 115 | * | C | 228 | C | 229 | cWW | cWW | |
| 3 | IL_1U9S_004 | 1U9S | 0.6223 | 1 | Major groove minor groove platform; mini C-loop | A | RIBONUCLEASE P | C | 164 | A | 166 | G | 167 | * | C | 133 | G | 134 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACUAC*GC | 1 |
| GAAAG*CC | 1 |
| CAAG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUA* | 1 |
| AAA* | 1 |
| AA* | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 |
|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove intercalation (2)
- Major groove minor groove platform; mini C-loop (1)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.61 | Avg 0.47 | Max 0.88
Coloring options: