Motif IL_90612.1 Version IL_90612.1 of this group appears in releases 3.2 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13		14	1-14	2-12	2-13	3-12	6-9	7-8
1	IL_4LFB_051	4LFB	0.0000	0	A	SSU rRNA	U	1247	A	1248	C	1249	A	1250	A	1251	A	1252	G	1253	*	C	1284	A	1285	A	1286	A	1287	A	1288	A	1289	G	1290	cWW		ntWH	tWH	tWW	cWW
2	IL_4V88_459	4V88	0.7688	3	A6	SSU rRNA	G	1480	C	1482	A	1483	G	1484	C	1485	G	1486	A	1487	*	U	1519	U	1520	U	1522	A	1524	A	1525	A	1526	C	1527	cWW	tWH			tWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UACAAAG*CAAAAAG	1
GCCAGCGA*UUGUGAAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACAAA*AAAAA	1
CCAGCG*UGUGAAA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-tWH-tWH-tWH-L-R-R-L-tWW-cWW
Heat map statistics: Min 0.77 | Avg 0.38 | Max 0.77

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Coloring options: Nucleotide numbers

Motif IL_90612.1 Version IL_90612.1 of this group appears in releases 3.2 to 3.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_90612.1 Version IL_90612.1 of this group appears in releases 3.2 to 3.17

Download

Csv

Json