RNA 3D Hub //

Motif IL_91129.1 Version IL_91129.1 of this group appears in releases 3.95 to 3.95

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_8CRE_4508CRE0.70640Other IL (H)CM SSU rRNAU1234U1235U1236*A1219C1220A1221cWWcWW
2 IL_3LOA_0033LOA0.62221Decoding loop with one bulged AA+BRNA (21-mer) + RNA (23-mer)C1407A1408C1409*G1491A1493G1494cWWcWW
3 IL_2ET8_0032ET80.48851Decoding loop relatedB+ARNA (22-mer)C29A30C31*G15A17G18cWWcWW
4 IL_7A0S_0927A0S0.39731Other ILX LSU rRNAC2570G2571U2572*A2579C2580G2582cWWcWW
5 IL_7Z4D_0167Z4D0.38000C+ATarget strand of 10 nucleotide complementary DNA substrateDC10DG11DT12*A9A10G11cWWncWHcWW
6 IL_7MLW_0067MLW0.30450Isolated tWW contactFGuanidine-I riboswitchA92C93G94*C71U72U73cWWcWW
7 IL_8AF0_0028AF00.28110Isolated cWH basepairC+DRNA (19-mer)G34U35C36*G34U35C36cWWcWHcWW
8 IL_406D_004406D0.00000Isolated cWH basepairA+ERNA (17-mer)U8||BG9||BG10||B*U25||BG26||BG27||BcWWcWHcWW
9 IL_8CRE_4058CRE0.35021Isolated cWH basepair (H)CM SSU rRNAA263U265C266*G285A286U287cWWcWW
10 IL_8AMI_0018AMI0.50510Other ILA+BRNA (9-mer)U4G5G6*U4G5||AG6cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAC*GAAG2
UGG*UGG2
UUU*ACA1
CGU*ACAG1
CGT*AAG1
ACG*CUU1
GUC*GUC1
AAUC*GAU1
Non-Watson-Crick part of the motif
SequenceCounts
A*AA2
G*G2
U*C1
G*CA1
G*A1
C*U1
U*U1
AU*A1

Release history

Release3.95
Date2025-03-26
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (2)
  • Other IL (2)
  • Decoding loop related (1)
  • Decoding loop with one bulged A (1)
  • Isolated tWW contact (1)
  • (1)
  • Isolated cWH basepair (H) (1)
  • Other IL (H) (1)
    • Basepair signature
    cWW-L-R-cWW
    Heat map statistics
    Min 0.27 | Avg 0.48 | Max 0.86
    Help

    Coloring options:

    IL_8CRE_450:IL_8CRE_450 = 0IL_8CRE_450:IL_3LOA_003 = 0.4982IL_8CRE_450:IL_2ET8_003 = 0.5103IL_8CRE_450:IL_7A0S_092 = 0.5666IL_8CRE_450:IL_7Z4D_016 = 0.5748IL_8CRE_450:IL_7MLW_006 = 0.5883IL_8CRE_450:IL_8AF0_002 = 0.6394IL_8CRE_450:IL_406D_004 = 0.7064IL_8CRE_450:IL_8CRE_405 = 0.863IL_8CRE_450:IL_8AMI_001 = 0.8548IL_3LOA_003:IL_8CRE_450 = 0.4982IL_3LOA_003:IL_3LOA_003 = 0IL_3LOA_003:IL_2ET8_003 = 0.2732IL_3LOA_003:IL_7A0S_092 = 0.4173IL_3LOA_003:IL_7Z4D_016 = 0.635IL_3LOA_003:IL_7MLW_006 = 0.6353IL_3LOA_003:IL_8AF0_002 = 0.6538IL_3LOA_003:IL_406D_004 = 0.6222IL_3LOA_003:IL_8CRE_405 = 0.8154IL_3LOA_003:IL_8AMI_001 = 0.822IL_2ET8_003:IL_8CRE_450 = 0.5103IL_2ET8_003:IL_3LOA_003 = 0.2732IL_2ET8_003:IL_2ET8_003 = 0IL_2ET8_003:IL_7A0S_092 = 0.3916IL_2ET8_003:IL_7Z4D_016 = 0.5475IL_2ET8_003:IL_7MLW_006 = 0.5256IL_2ET8_003:IL_8AF0_002 = 0.5099IL_2ET8_003:IL_406D_004 = 0.4885IL_2ET8_003:IL_8CRE_405 = 0.6557IL_2ET8_003:IL_8AMI_001 = 0.7262IL_7A0S_092:IL_8CRE_450 = 0.5666IL_7A0S_092:IL_3LOA_003 = 0.4173IL_7A0S_092:IL_2ET8_003 = 0.3916IL_7A0S_092:IL_7A0S_092 = 0IL_7A0S_092:IL_7Z4D_016 = 0.4395IL_7A0S_092:IL_7MLW_006 = 0.4598IL_7A0S_092:IL_8AF0_002 = 0.4208IL_7A0S_092:IL_406D_004 = 0.3973IL_7A0S_092:IL_8CRE_405 = 0.6145IL_7A0S_092:IL_8AMI_001 = 0.6265IL_7Z4D_016:IL_8CRE_450 = 0.5748IL_7Z4D_016:IL_3LOA_003 = 0.635IL_7Z4D_016:IL_2ET8_003 = 0.5475IL_7Z4D_016:IL_7A0S_092 = 0.4395IL_7Z4D_016:IL_7Z4D_016 = 0IL_7Z4D_016:IL_7MLW_006 = 0.2723IL_7Z4D_016:IL_8AF0_002 = 0.3171IL_7Z4D_016:IL_406D_004 = 0.38IL_7Z4D_016:IL_8CRE_405 = 0.5148IL_7Z4D_016:IL_8AMI_001 = 0.6157IL_7MLW_006:IL_8CRE_450 = 0.5883IL_7MLW_006:IL_3LOA_003 = 0.6353IL_7MLW_006:IL_2ET8_003 = 0.5256IL_7MLW_006:IL_7A0S_092 = 0.4598IL_7MLW_006:IL_7Z4D_016 = 0.2723IL_7MLW_006:IL_7MLW_006 = 0IL_7MLW_006:IL_8AF0_002 = 0.2932IL_7MLW_006:IL_406D_004 = 0.3045IL_7MLW_006:IL_8CRE_405 = 0.4405IL_7MLW_006:IL_8AMI_001 = 0.5938IL_8AF0_002:IL_8CRE_450 = 0.6394IL_8AF0_002:IL_3LOA_003 = 0.6538IL_8AF0_002:IL_2ET8_003 = 0.5099IL_8AF0_002:IL_7A0S_092 = 0.4208IL_8AF0_002:IL_7Z4D_016 = 0.3171IL_8AF0_002:IL_7MLW_006 = 0.2932IL_8AF0_002:IL_8AF0_002 = 0IL_8AF0_002:IL_406D_004 = 0.2811IL_8AF0_002:IL_8CRE_405 = 0.4196IL_8AF0_002:IL_8AMI_001 = 0.5619IL_406D_004:IL_8CRE_450 = 0.7064IL_406D_004:IL_3LOA_003 = 0.6222IL_406D_004:IL_2ET8_003 = 0.4885IL_406D_004:IL_7A0S_092 = 0.3973IL_406D_004:IL_7Z4D_016 = 0.38IL_406D_004:IL_7MLW_006 = 0.3045IL_406D_004:IL_8AF0_002 = 0.2811IL_406D_004:IL_406D_004 = 0IL_406D_004:IL_8CRE_405 = 0.3502IL_406D_004:IL_8AMI_001 = 0.5051IL_8CRE_405:IL_8CRE_450 = 0.863IL_8CRE_405:IL_3LOA_003 = 0.8154IL_8CRE_405:IL_2ET8_003 = 0.6557IL_8CRE_405:IL_7A0S_092 = 0.6145IL_8CRE_405:IL_7Z4D_016 = 0.5148IL_8CRE_405:IL_7MLW_006 = 0.4405IL_8CRE_405:IL_8AF0_002 = 0.4196IL_8CRE_405:IL_406D_004 = 0.3502IL_8CRE_405:IL_8CRE_405 = 0IL_8CRE_405:IL_8AMI_001 = 0.5931IL_8AMI_001:IL_8CRE_450 = 0.8548IL_8AMI_001:IL_3LOA_003 = 0.822IL_8AMI_001:IL_2ET8_003 = 0.7262IL_8AMI_001:IL_7A0S_092 = 0.6265IL_8AMI_001:IL_7Z4D_016 = 0.6157IL_8AMI_001:IL_7MLW_006 = 0.5938IL_8AMI_001:IL_8AF0_002 = 0.5619IL_8AMI_001:IL_406D_004 = 0.5051IL_8AMI_001:IL_8CRE_405 = 0.5931IL_8AMI_001:IL_8AMI_001 = 0IL_8CRE_450IL_3LOA_003IL_2ET8_003IL_7A0S_092IL_7Z4D_016IL_7MLW_006IL_8AF0_002IL_406D_004IL_8CRE_405IL_8AMI_001Discrepancy0.000.200.400.600.80
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