Motif IL_91129.1 Version IL_91129.1 of this group appears in releases 3.95 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8CRE_450 | 8CRE | 0.7064 | 0 | Other IL (H) | CM | SSU rRNA | U | 1234 | U | 1235 | U | 1236 | * | A | 1219 | C | 1220 | A | 1221 | cWW | cWW | |
| 2 | IL_3LOA_003 | 3LOA | 0.6222 | 1 | Decoding loop with one bulged A | A+B | RNA (21-mer) + RNA (23-mer) | C | 1407 | A | 1408 | C | 1409 | * | G | 1491 | A | 1493 | G | 1494 | cWW | cWW | |
| 3 | IL_2ET8_003 | 2ET8 | 0.4885 | 1 | Decoding loop related | B+A | RNA (22-mer) | C | 29 | A | 30 | C | 31 | * | G | 15 | A | 17 | G | 18 | cWW | cWW | |
| 4 | IL_7A0S_092 | 7A0S | 0.3973 | 1 | Other IL | X | LSU rRNA | C | 2570 | G | 2571 | U | 2572 | * | A | 2579 | C | 2580 | G | 2582 | cWW | cWW | |
| 5 | IL_7Z4D_016 | 7Z4D | 0.3800 | 0 | C+A | Target strand of 10 nucleotide complementary DNA substrate | DC | 10 | DG | 11 | DT | 12 | * | A | 9 | A | 10 | G | 11 | cWW | ncWH | cWW | |
| 6 | IL_7MLW_006 | 7MLW | 0.3045 | 0 | Isolated tWW contact | F | Guanidine-I riboswitch | A | 92 | C | 93 | G | 94 | * | C | 71 | U | 72 | U | 73 | cWW | cWW | |
| 7 | IL_8AF0_002 | 8AF0 | 0.2811 | 0 | Isolated cWH basepair | C+D | RNA (19-mer) | G | 34 | U | 35 | C | 36 | * | G | 34 | U | 35 | C | 36 | cWW | cWH | cWW |
| 8 | IL_406D_004 | 406D | 0.0000 | 0 | Isolated cWH basepair | A+E | RNA (17-mer) | U | 8||B | G | 9||B | G | 10||B | * | U | 25||B | G | 26||B | G | 27||B | cWW | cWH | cWW |
| 9 | IL_8CRE_405 | 8CRE | 0.3502 | 1 | Isolated cWH basepair | CM | SSU rRNA | A | 263 | U | 265 | C | 266 | * | G | 285 | A | 286 | U | 287 | cWW | cWW | |
| 10 | IL_8AMI_001 | 8AMI | 0.5051 | 0 | Other IL | A+B | RNA (9-mer) | U | 4 | G | 5 | G | 6 | * | U | 4 | G | 5||A | G | 6 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAC*GAAG | 2 |
| UGG*UGG | 2 |
| UUU*ACA | 1 |
| CGU*ACAG | 1 |
| CGT*AAG | 1 |
| ACG*CUU | 1 |
| GUC*GUC | 1 |
| AAUC*GAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AA | 2 |
| G*G | 2 |
| U*C | 1 |
| G*CA | 1 |
| G*A | 1 |
| C*U | 1 |
| U*U | 1 |
| AU*A | 1 |
Release history
| Release | 3.95 |
|---|---|
| Date | 2025-03-26 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated cWH basepair (3)
- Other IL (2)
- Decoding loop related (1)
- Decoding loop with one bulged A (1)
- Isolated tWW contact (1)
- (1)
- Other IL (H) (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.27 | Avg 0.48 | Max 0.86
Coloring options: