Motif IL_91482.2 Version IL_91482.2 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_045 | 4V9F | 0.4426 | 2 | Bulged stacked bases | 0 | LSU rRNA | G | 1269 | U | 1270 | * | A | 1286 | C | 1289 | cWW | cWW |
| 2 | IL_4V88_416 | 4V88 | 0.0000 | 5 | A6 | SSU rRNA | U | 1104 | C | 1105 | * | G | 616 | A | 622 | cWW | cWW | |
| 3 | IL_4YAZ_007 | 4YAZ | 0.7721 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | C | 68 | G | 69 | * | U | 47 | G | 50 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AAUC | 1 |
| UC*GUUAAAA | 1 |
| CG*UAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AU | 1 |
| *UUAAA | 1 |
| *AA | 1 |
- Annotations
-
- (1)
- Bulged stacked bases (1)
- Multiple bulged bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.44 | Avg 0.49 | Max 0.99
Coloring options: