Motif IL_92114.4 Version IL_92114.4 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-6 | 3-8 | 4-5 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VWW_153 | 1VWW | 0.8483 | 0 | 5 | 28S ribosomal RNA | G | 4863 | U | 4864 | C | 4865 | C | 4866 | * | G | 4768 | G | 4769 | U | 4770 | C | 4771 | C | 4772 | cWW | ncBW | cWW | |||
| 2 | IL_2Y9B_003 | 2Y9B | 0.2455 | 0 | V | HOMO SAPIENS U4A SNRNA | U | 846 | A | 847 | U | 848 | G | 849 | * | C | 856 | U | 857 | A | 858 | A | 859 | G | 860 | cWW | tHW | cWW | ncSH | ||
| 3 | IL_1U6B_003 | 1U6B | 0.2372 | 0 | Receptor of 11-nt loop-receptor motif | B | 197-MER | U | 80 | A | 81 | U | 82 | G | 83 | * | C | 61 | U | 62 | A | 63 | A | 64 | G | 65 | cWW | tHW | ncWW | cWW | cSH |
| 4 | IL_3T4B_002 | 3T4B | 0.1278 | 0 | Receptor of 11-nt loop-receptor motif | A | HCV IRES pseudoknot domain plus crystallization module | U | 17 | A | 18 | U | 19 | G | 20 | * | C | 2 | U | 3 | A | 4 | A | 5 | G | 6 | cWW | tHW | cWW | cWW | cSH |
| 5 | IL_1GID_007 | 1GID | 0.0000 | 0 | A | P4-P6 RNA RIBOZYME DOMAIN | U | 247 | A | 248 | U | 249 | G | 250 | * | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | cWW | tHW | ncWW | cWW | cSH | |
| 6 | IL_1GID_014 | 1GID | 0.0114 | 0 | Receptor of 11-nt loop-receptor motif | B | P4-P6 RNA RIBOZYME DOMAIN | U | 247 | A | 248 | U | 249 | G | 250 | * | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | cWW | tHW | ncWW | cWW | cSH |
| 7 | IL_1X8W_007 | 1X8W | 0.1986 | 0 | A | Tetrahymena ribozyme RNA | U | 247 | A | 248 | U | 249 | G | 250 | * | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | ncWW | cWW | ||||
| 8 | IL_1NBS_008 | 1NBS | 0.3073 | 0 | Receptor of 11-nt loop-receptor motif | B | RNase P class B | U | 159 | A | 160 | U | 161 | G | 162 | * | C | 146 | U | 147 | A | 148 | C | 149 | G | 150 | cWW | tHW | cWW | ncSH | |
| 9 | IL_1KXK_002 | 1KXK | 0.3090 | 0 | Receptor of 11-nt loop-receptor motif | A | ai5g group II Self-splicing intron | U | 54 | A | 55 | U | 56 | G | 57 | * | C | 15 | U | 16 | A | 17 | A | 18 | G | 19 | cWW | tHW | cWW | cSH | |
| 10 | IL_4FAW_013 | 4FAW | 0.2824 | 0 | A | Group II catalytic intron D1-D4-3 | U | 332 | A | 333 | U | 334 | G | 335 | * | C | 346 | U | 347 | A | 348 | A | 349 | G | 350 | cWW | tHW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUG*CUAAG | 8 |
| GUCC*GGUCC | 1 |
| UAUG*CUACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*UAA | 8 |
| UC*GUC | 1 |
| AU*UAC | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92114.4 | Only in the parent motif |
|---|---|---|---|
| IL_92114.3 Compare | IL_1U6B_003, IL_1KXK_002, IL_1X8W_007, IL_1NBS_008, IL_1GID_007, IL_2Y9B_003, IL_1GID_014, IL_3T4B_002, IL_4FAW_013 | IL_1VWW_153 |
Children motifs
| Child motif | Common motif instances | Only in IL_92114.4 | Only in the child motif |
|---|---|---|---|
| IL_92114.5 Compare | IL_1U6B_003, IL_1KXK_002, IL_1X8W_007, IL_1NBS_008, IL_1GID_014, IL_2Y9B_003, IL_1GID_007, IL_3T4B_002, IL_4FAW_013 | IL_1VWW_153 | IL_4W21_159, IL_4R0D_017 |
- Annotations
-
- (5)
- Receptor of 11-nt loop-receptor motif (5)
- Basepair signature
- cWW-cSH-tHW-L-cWW
- Heat map statistics
- Min 0.01 | Avg 0.35 | Max 0.98
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