Motif IL_92114.3 Version IL_92114.3 of this group appears in releases 0.10 to 1.15

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9	1-9	2-6	3-8	4-5	7-8
1	IL_2Y9B_003	2Y9B	0.2455		V	HOMO SAPIENS U4A SNRNA	U	846	A	847	U	848	G	849	*	C	856	U	857	A	858	A	859	G	860	cWW	tHW		cWW	ncSH
2	IL_1U6B_003	1U6B	0.2372	Receptor of 11-nt loop-receptor motif	B	197-MER	U	80	A	81	U	82	G	83	*	C	61	U	62	A	63	A	64	G	65	cWW	tHW	ncWW	cWW	cSH
3	IL_3T4B_002	3T4B	0.1278	Receptor of 11-nt loop-receptor motif	A	HCV IRES pseudoknot domain plus crystallization module	U	17	A	18	U	19	G	20	*	C	2	U	3	A	4	A	5	G	6	cWW	tHW	cWW	cWW	cSH
4	IL_1GID_007	1GID	0.0000		A	P4-P6 RNA RIBOZYME DOMAIN	U	247	A	248	U	249	G	250	*	C	223	U	224	A	225	A	226	G	227	cWW	tHW	ncWW	cWW	cSH
5	IL_1GID_014	1GID	0.0114		B	P4-P6 RNA RIBOZYME DOMAIN	U	247	A	248	U	249	G	250	*	C	223	U	224	A	225	A	226	G	227	cWW	tHW	ncWW	cWW	cSH
6	IL_1X8W_007	1X8W	0.1986		A	Tetrahymena ribozyme RNA	U	247	A	248	U	249	G	250	*	C	223	U	224	A	225	A	226	G	227	ncWW			cWW
7	IL_1NBS_008	1NBS	0.3073	Receptor of 11-nt loop-receptor motif	B	RNase P class B	U	159	A	160	U	161	G	162	*	C	146	U	147	A	148	C	149	G	150	cWW	tHW		cWW	ncSH
8	IL_1KXK_002	1KXK	0.3090	Receptor of 11-nt loop-receptor motif	A	ai5g group II Self-splicing intron	U	54	A	55	U	56	G	57	*	C	15	U	16	A	17	A	18	G	19	cWW	tHW		cWW	cSH
9	IL_4FAW_013	4FAW	0.2824		A	Group II catalytic intron D1-D4-3	U	332	A	333	U	334	G	335	*	C	346	U	347	A	348	A	349	G	350	cWW	tHW		cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
UAUG*CUAAG	8
UAUG*CUACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AU*UAA	8
AU*UAC	1

Release history

Release	0.10	0.11	0.12	1.0	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14	1.15
Date	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-08	2013-05-04	2013-06-01	2013-07-01	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29	2014-04-27	2014-06-20
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_92114.3	Only in the parent motif
IL_92114.2 Compare	IL_1U6B_003, IL_1KXK_002, IL_1X8W_007, IL_1NBS_008, IL_1GID_007, IL_2Y9B_003, IL_1GID_014, IL_3T4B_002	IL_4FAW_013	IL_3G78_014

Children motifs

Child motif	Common motif instances	Only in IL_92114.3	Only in the child motif
IL_92114.4 Compare	IL_1U6B_003, IL_1KXK_002, IL_1X8W_007, IL_1NBS_008, IL_1GID_007, IL_2Y9B_003, IL_1GID_014, IL_3T4B_002, IL_4FAW_013		IL_1VWW_153

Annotations: (5)
Receptor of 11-nt loop-receptor motif (4)
Basepair signature: cWW-cSH-tHW-L-cWW
Heat map statistics: Min 0.01 | Avg 0.24 | Max 0.40

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