#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 8 91-92-63-84-57-8
1 IL_2Y9B_0032Y9B0.24550VHOMO SAPIENS U4A SNRNAU846A847U848G849*C856U857A858A859G860cWWtHWcWWncSH
2 IL_1U6B_0031U6B0.23720Receptor of 11-nt loop-receptor motifB197-MERU80A81U82G83*C61U62A63A64G65cWWtHWncWWcWWcSH
3 IL_3T4B_0023T4B0.12780Receptor of 11-nt loop-receptor motifAHCV IRES pseudoknot domain plus crystallization moduleU17A18U19G20*C2U3A4A5G6cWWtHWcWWcWWcSH
4 IL_1GID_0071GID0.00000AP4-P6 RNA RIBOZYME DOMAINU247A248U249G250*C223U224A225A226G227cWWtHWncWWcWWcSH
5 IL_1GID_0141GID0.01140BP4-P6 RNA RIBOZYME DOMAINU247A248U249G250*C223U224A225A226G227cWWtHWncWWcWWcSH
6 IL_1X8W_0071X8W0.19860ATetrahymena ribozyme RNAU247A248U249G250*C223U224A225A226G227ncWWcWW
7 IL_1NBS_0081NBS0.30730Receptor of 11-nt loop-receptor motifB RNase P class BU159A160U161G162*C146U147A148C149G150cWWtHWcWWncSH
8 IL_1KXK_0021KXK0.30900Receptor of 11-nt loop-receptor motifAai5g group II Self-splicing intronU54A55U56G57*C15U16A17A18G19cWWtHWcWWcSH
9 IL_4FAW_0134FAW0.28240AGroup II catalytic intron D1-D4-1U332A333U334G335*C346U347A348A349G350cWWtHWcWWcSH

3D structures

Complete motif including flanking bases
SequenceCounts
UAUG*CUAAG8
UAUG*CUACG1
Non-Watson-Crick part of the motif
SequenceCounts
AU*UAA8
AU*UAC1

Release history

Release0.100.110.121.01.11.21.31.41.51.61.71.81.91.101.111.121.131.141.15
Date2013-02-172013-02-172013-02-172013-03-042013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-20
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_92114.3Only in the parent motif
IL_92114.2
Compare
IL_1U6B_003, IL_1KXK_002, IL_1X8W_007, IL_1NBS_008, IL_1GID_007, IL_2Y9B_003, IL_1GID_014, IL_3T4B_002IL_4FAW_013IL_3G78_014

Children motifs

Child motifCommon motif instancesOnly in IL_92114.3Only in the child motif
IL_92114.4
Compare
IL_1U6B_003, IL_1KXK_002, IL_1X8W_007, IL_1NBS_008, IL_1GID_007, IL_2Y9B_003, IL_1GID_014, IL_3T4B_002, IL_4FAW_013IL_1VWW_153
Annotations
  • (5)
  • Receptor of 11-nt loop-receptor motif (4)
  • Basepair signature
    cWW-cSH-tHW-L-cWW
    Heat map statistics
    Min 0.01 | Avg 0.24 | Max 0.40
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