Motif IL_92114.3 Version IL_92114.3 of this group appears in releases 0.10 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-6 | 3-8 | 4-5 | 7-8 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2Y9B_003 | 2Y9B | 0.2455 | 0 | V | HOMO SAPIENS U4A SNRNA | U | 846 | A | 847 | U | 848 | G | 849 | * | C | 856 | U | 857 | A | 858 | A | 859 | G | 860 | cWW | tHW | cWW | ncSH | ||
2 | IL_1U6B_003 | 1U6B | 0.2372 | 0 | Receptor of 11-nt loop-receptor motif | B | 197-MER | U | 80 | A | 81 | U | 82 | G | 83 | * | C | 61 | U | 62 | A | 63 | A | 64 | G | 65 | cWW | tHW | ncWW | cWW | cSH |
3 | IL_3T4B_002 | 3T4B | 0.1278 | 0 | Receptor of 11-nt loop-receptor motif | A | HCV IRES pseudoknot domain plus crystallization module | U | 17 | A | 18 | U | 19 | G | 20 | * | C | 2 | U | 3 | A | 4 | A | 5 | G | 6 | cWW | tHW | cWW | cWW | cSH |
4 | IL_1GID_007 | 1GID | 0.0000 | 0 | A | P4-P6 RNA RIBOZYME DOMAIN | U | 247 | A | 248 | U | 249 | G | 250 | * | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | cWW | tHW | ncWW | cWW | cSH | |
5 | IL_1GID_014 | 1GID | 0.0114 | 0 | B | P4-P6 RNA RIBOZYME DOMAIN | U | 247 | A | 248 | U | 249 | G | 250 | * | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | cWW | tHW | ncWW | cWW | cSH | |
6 | IL_1X8W_007 | 1X8W | 0.1986 | 0 | A | Tetrahymena ribozyme RNA | U | 247 | A | 248 | U | 249 | G | 250 | * | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | ncWW | cWW | ||||
7 | IL_1NBS_008 | 1NBS | 0.3073 | 0 | Receptor of 11-nt loop-receptor motif | B | RNase P class B | U | 159 | A | 160 | U | 161 | G | 162 | * | C | 146 | U | 147 | A | 148 | C | 149 | G | 150 | cWW | tHW | cWW | ncSH | |
8 | IL_1KXK_002 | 1KXK | 0.3090 | 0 | Receptor of 11-nt loop-receptor motif | A | ai5g group II Self-splicing intron | U | 54 | A | 55 | U | 56 | G | 57 | * | C | 15 | U | 16 | A | 17 | A | 18 | G | 19 | cWW | tHW | cWW | cSH | |
9 | IL_4FAW_013 | 4FAW | 0.2824 | 0 | A | Group II catalytic intron D1-D4-1 | U | 332 | A | 333 | U | 334 | G | 335 | * | C | 346 | U | 347 | A | 348 | A | 349 | G | 350 | cWW | tHW | cWW | cSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAUG*CUAAG | 8 |
UAUG*CUACG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AU*UAA | 8 |
AU*UAC | 1 |
Release history
Release | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_92114.3 | Only in the parent motif |
---|---|---|---|
IL_92114.2 Compare | IL_1U6B_003, IL_1KXK_002, IL_1X8W_007, IL_1NBS_008, IL_1GID_007, IL_2Y9B_003, IL_1GID_014, IL_3T4B_002 | IL_4FAW_013 | IL_3G78_014 |
Children motifs
Child motif | Common motif instances | Only in IL_92114.3 | Only in the child motif |
---|---|---|---|
IL_92114.4 Compare | IL_1U6B_003, IL_1KXK_002, IL_1X8W_007, IL_1NBS_008, IL_1GID_007, IL_2Y9B_003, IL_1GID_014, IL_3T4B_002, IL_4FAW_013 | IL_1VWW_153 |
- Annotations
-
- (5)
- Receptor of 11-nt loop-receptor motif (4)
- Basepair signature
- cWW-cSH-tHW-L-cWW
- Heat map statistics
- Min 0.01 | Avg 0.24 | Max 0.40
Coloring options: