Motif IL_92947.1 Version IL_92947.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5AN9_043 | 5AN9 | 0.1924 | 1 | Major groove platform with intercalation (H) | N | LSU rRNA | U | 3224 | U | 3225 | * | A | 3242 | A | 3243 | G | 3245 | ntHS | cWW | cWW | |
| 2 | IL_3J79_107 | 3J79 | 0.1254 | 1 | Major groove platform with intercalation (H) | A | LSU rRNA | U | 3250 | U | 3251 | * | A | 3268 | A | 3269 | G | 3271 | ntHS | cWW | cWW | |
| 3 | IL_4V8P_416 | 4V8P | 0.1549 | 1 | Major groove platform with intercalation (H) | F1 | LSU rRNA | U | 2879 | U | 2880 | * | A | 2897 | A | 2898 | G | 2900 | ntHS | cWW | cWW | |
| 4 | IL_4V91_120 | 4V91 | 0.0000 | 1 | Major groove platform with intercalation (H) | 1 | LSU rRNA | U | 2891 | A | 2892 | * | U | 2909 | A | 2910 | G | 2912 | cWW | cWW | ||
| 5 | IL_4V88_358 | 4V88 | 0.1356 | 1 | A5 | LSU rRNA | U | 2891 | A | 2892 | * | U | 2909 | A | 2910 | G | 2912 | tHS | cWW | cWW | ||
| 6 | IL_3J9W_168 | 3J9W | 0.1747 | 1 | Major groove platform with intercalation (H) | BA | LSU rRNA | U | 2551 | G | 2552 | * | C | 2569 | A | 2570 | G | 2572 | ntHS | cWW | cWW | |
| 7 | IL_4V9F_089 | 4V9F | 0.2325 | 1 | Major groove platform with intercalation | 0 | LSU rRNA | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW | |
| 8 | IL_5J7L_342 | 5J7L | 0.3020 | 1 | Major groove platform with intercalation | DA | LSU rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 9 | IL_5FDU_101 | 5FDU | 0.2899 | 1 | Major groove platform with intercalation (H) | 1A | LSU rRNA | U | 2534 | G | 2535 | * | C | 2552 | A | 2553 | G | 2555 | ntHS | cWW | cWW | |
| 10 | IL_4IOA_093 | 4IOA | 0.3270 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | ntHS | cWW | cWW | |
| 11 | IL_4KQY_009 | 4KQY | 0.4525 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 49||||4_555 | G | 50||||4_555 | * | C | 73||||4_555 | A | 74||||4_555 | G | 76||||4_555 | cWW | cWW | ncSH | |
| 12 | IL_4KQY_004 | 4KQY | 0.4525 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 49 | G | 50 | * | C | 73 | A | 74 | G | 76 | cWW | cWW | ncSH | |
| 13 | IL_5AJ3_020 | 5AJ3 | 0.6297 | 0 | A | SSU rRNA | U | 382 | G | 383 | * | C | 373 | C | 374 | A | 375 | cWW | cWW | |||
| 14 | IL_3J7A_015 | 3J7A | 0.7003 | 0 | A | SSU rRNA | A | 291 | G | 292 | * | C | 270 | G | 271 | U | 272 | cWW | cWW | |||
| 15 | IL_2QWY_008 | 2QWY | 0.8592 | 0 | Single stack bend | C | SAM-II riboswitch | U | 21 | G | 22 | * | C | 43 | U | 44 | A | 45 | cWW | cWW | ||
| 16 | IL_3J9W_133 | 3J9W | 0.8170 | 5 | BA | LSU rRNA | A | 1714 | G | 1719 | * | C | 2019 | U | 2020 | U | 2022 | cWW | cWW | |||
| 17 | IL_4V19_029 | 4V19 | 0.8116 | 5 | Intercalated tWH (H) | A | LSU rRNA | A | 802 | G | 807 | * | C | 983 | U | 984 | U | 986 | cWW | cWW | ||
| 18 | IL_5AJ0_116 | 5AJ0 | 0.8141 | 5 | A2 | LSU rRNA | A | 2829 | G | 2834 | * | C | 3808 | U | 3809 | U | 3811 | cWW | cWW | |||
| 19 | IL_4V91_083 | 4V91 | 0.8138 | 5 | 1 | LSU rRNA | A | 1901 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW | |||
| 20 | IL_3J79_076 | 3J79 | 0.8131 | 5 | A | LSU rRNA | A | 2169 | G | 2174 | * | C | 2626 | U | 2627 | U | 2629 | cWW | cWW | |||
| 21 | IL_3JCS_072 | 3JCS | 0.8232 | 5 | 2 | LSU rRNA | A | 85 | G | 90 | * | C | 579 | U | 580 | U | 582 | cWW | cWW | |||
| 22 | IL_3J7P_095 | 3J7P | 0.8096 | 5 | 5 | LSU rRNA | A | 2850 | G | 2855 | * | C | 3837 | U | 3838 | U | 3840 | cWW | cWW | |||
| 23 | IL_4V8P_383 | 4V8P | 0.8020 | 5 | F1 | LSU rRNA | A | 1925 | G | 1930 | * | C | 2328 | U | 2329 | U | 2331 | cWW | cWW | |||
| 24 | IL_4V88_326 | 4V88 | 0.8290 | 5 | A5 | LSU rRNA | A | 1901 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCGG*CUGU | 7 |
| UG*CAAG | 5 |
| UU*AAAG | 2 |
| UA*UAAG | 2 |
| CG*CAAG | 2 |
| ACUCGG*CUGU | 2 |
| UU*AACG | 1 |
| UG*CCA | 1 |
| AG*CGU | 1 |
| UG*CUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 11 |
| GUCG*UG | 7 |
| CUCG*UG | 2 |
| *AC | 1 |
| *C | 1 |
| *G | 1 |
| *U | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Major groove platform with intercalation (H) (7)
- Minor groove platform (2)
- Major groove platform with intercalation (2)
- Single stack bend (1)
- Intercalated tWH (H) (1)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.58 | Max 0.94
Coloring options: