IL_5AJ0_116

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

5AJ0|1|A2|G|3810

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92947.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5AJ0|1|A2|A|2829
5AJ0|1|A2|G|2830
5AJ0|1|A2|U|2831
5AJ0|1|A2|C|2832
5AJ0|1|A2|G|2833
5AJ0|1|A2|G|2834
*
5AJ0|1|A2|C|3808
5AJ0|1|A2|U|3809
5AJ0|1|A2|G|3810
5AJ0|1|A2|U|3811

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23