Motif IL_93341.3 Version IL_93341.3 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-5 | 3-7 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5T83_006 | 5T83 | 0.7594 | 1 | A | Guanidine-I riboswitch | G | 33 | G | 34 | C | 36 | U | 37 | G | 38 | * | C | 21 | G | 22 | C | 23 | cWW | cWH | ncSH | cWW | ntHS | cWW | |||
| 2 | IL_6DLR_006 | 6DLR | 0.7165 | 1 | A | Guanidine-I riboswitch | G | 36 | G | 37 | C | 39 | U | 40 | G | 41 | * | C | 21 | G | 22 | C | 23 | cWW | cWH | cSH | cWW | tHS | cWW | |||
| 3 | IL_7MLW_009 | 7MLW | 0.7038 | 0 | F | Guanidine-I riboswitch | U | 43 | G | 44 | C | 45 | U | 46 | G | 47 | * | C | 16 | G | 17 | G | 18 | cWW | cWH | ncSH | cWW | tHS | cWW | |||
| 4 | IL_7MLW_003 | 7MLW | 0.1326 | 0 | F | Guanidine-I riboswitch | G | 11 | G | 12 | U | 13 | U | 14 | C | 15 | * | G | 48 | U | 49 | C | 50 | cWW | cWB | cSH | cSH | cWW | ||||
| 5 | IL_6DLR_002 | 6DLR | 0.1341 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | U | 43 | C | 44 | cWW | cWB | ncSH | cSH | ncWw | cWW | ||
| 6 | IL_5U3G_002 | 5U3G | 0.1022 | 0 | 8-nt loop receptor | B | Guanidine-I riboswitch | G | 10 | G | 11 | U | 12 | U | 13 | C | 14 | * | G | 27 | U | 28 | C | 29 | cWW | cWB | cSH | ncWw | cWW | |||
| 7 | IL_5T83_002 | 5T83 | 0.0000 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 39 | U | 40 | C | 41 | cWW | ncWB | cSH | ncSH | cWW | |||
| 8 | IL_6M0X_001 | 6M0X | 0.3587 | 0 | B | RNA (71-MER) | A | 38 | A | 39 | G | 40 | C | 41 | U | 42 | * | A | 29 | C | 30 | U | 31 | cWW | ncWWa | ncSH | ncwW | cWW | ||||
| 9 | IL_7EL1_001 | 7EL1 | 0.3592 | 0 | B | RNA (73-MER) | A | 42 | A | 43 | U | 44 | C | 45 | U | 46 | * | A | 29 | C | 30 | U | 31 | cWW | ncWWa | ncwW | cWW | |||||
| 10 | IL_7ENI_001 | 7ENI | 0.3688 | 0 | B | sgRNA (74-MER) | A | 42 | A | 43 | U | 44 | C | 45 | U | 46 | * | A | 29 | C | 30 | U | 31 | cWW | ncSH | ncwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUC*GUC | 4 |
| AAUCU*ACU | 2 |
| GGUCUG*CGC | 1 |
| GGACUG*CGC | 1 |
| UGCUG*CGG | 1 |
| AAGCU*ACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUU*U | 4 |
| AUC*C | 2 |
| GUCU*G | 1 |
| GACU*G | 1 |
| GCU*G | 1 |
| AGC*C | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- 8-nt loop receptor (3)
- Basepair signature
- cWW-cWW-cWW-cSH-R
- Heat map statistics
- Min 0.10 | Avg 0.46 | Max 0.94
Coloring options: