Motif IL_94181.3 Version IL_94181.3 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4C7O_002 | 4C7O | 0.4311 | 0 | Single stack bend | E | SRP RNA | A | 36 | U | 37 | G | 38 | * | C | 8 | U | 9 | cWW | cWW | |
| 2 | IL_5IBB_340 | 5IBB | 0.3759 | 0 | Single base bend | 1L | tRNA | G | 63 | U | 64 | C | 65 | * | G | 50 | C | 51 | cWW | cWW | |
| 3 | IL_5TBW_101 | 5TBW | 0.0000 | 1 | Single stack bend with bulge | 1 | LSU rRNA | G | 2770 | U | 2771 | C | 2773 | * | G | 2787 | C | 2788 | cWW | cWW | |
| 4 | IL_4UYK_002 | 4UYK | 0.3623 | 0 | Not an internal loop | R | SRP RNA | G | 78 | C | 79 | G | 80 | * | C | 121 | C | 122 | ncwW | cWW | |
| 5 | IL_5J7L_267 | 5J7L | 0.7377 | 1 | Other IL | DA | LSU rRNA | A | 844 | A | 845||A | U | 847||A | * | A | 933 | U | 934 | cWW | cWW | |
| 6 | IL_4R4V_011 | 4R4V | 0.8297 | 1 | Intercalated cWS | A | VS ribozyme RNA | U | 719||||7_556 | A | 720||||7_556 | G | 722||||7_556 | * | C | 755||||7_556 | A | 756||||7_556 | cWW | cWW | |
| 7 | IL_4R4V_005 | 4R4V | 0.8297 | 1 | Intercalated cWS | A | VS ribozyme RNA | U | 719 | A | 720 | G | 722 | * | C | 755 | A | 756 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CA | 2 |
| AUG*CU | 1 |
| GUC*GC | 1 |
| GUCC*GC | 1 |
| GCG*CC | 1 |
| AU*AAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U* | 2 |
| AA* | 2 |
| UC* | 1 |
| C* | 1 |
| *AU | 1 |
- Annotations
-
- Intercalated cWS (2)
- Single stack bend (1)
- Not an internal loop (1)
- Single base bend (1)
- Other IL (1)
- Single stack bend with bulge (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.36 | Avg 0.56 | Max 0.94
Coloring options: