Motif IL_94430.4 Version IL_94430.4 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_046 | 2AW7 | 0.3784 | 2 | A | 16S ribosomal RNA | G | 993 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |
| 2 | IL_1FJG_039 | 1FJG | 0.4020 | 2 | Minor groove platform (H) | A | SSU rRNA | G | 993 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW |
| 3 | IL_4IOA_066 | 4IOA | 0.3993 | 1 | Minor groove platform, major groove intercalation (H) | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | cWW | |
| 4 | IL_1S72_066 | 1S72 | 0.3634 | 1 | Minor groove platform, major groove intercalation (H) | 0 | LSU rRNA | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | |
| 5 | IL_3V2F_068 | 3V2F | 0.4157 | 1 | A | 23S Ribosomal RNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | cWW | ||
| 6 | IL_4A1B_086 | 4A1B | 0.4236 | 1 | 1 | 26S RRNA | C | 2191 | A | 2193 | G | 2194 | * | C | 2240 | G | 2241 | cWW | cWW | ||
| 7 | IL_2QBG_072 | 2QBG | 0.3630 | 1 | B | 23S rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | tHS | cWW | |
| 8 | IL_4IOA_106 | 4IOA | 0.3466 | 1 | Y | 5S rRNA | G | 53 | C | 55 | G | 56 | * | C | 32 | C | 33 | cWW | ntHS | cWW | |
| 9 | IL_3Q1Q_003 | 3Q1Q | 0.0000 | 2 | B | RNase P RNA | G | 103 | A | 106 | G | 107 | * | C | 209 | C | 210 | cWW | cWS | cWW | |
| 10 | IL_2AW7_007 | 2AW7 | 0.2244 | 1 | A | 16S ribosomal RNA | U | 70 | A | 72 | C | 73 | * | G | 97 | A | 98 | cWW | cWS | cWW | |
| 11 | IL_3U5H_145 | 3U5H | 0.3310 | 1 | 7 | 5S rRNA | G | 49 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW | |
| 12 | IL_3V2F_032 | 3V2F | 0.6643 | 0 | A | 23S Ribosomal RNA | U | 877 | A | 878 | G | 879 | * | C | 898 | A | 899 | cWW | cWW | ||
| 13 | IL_3V2F_055 | 3V2F | 0.5961 | 0 | A | 23S Ribosomal RNA | G | 1448 | A | 1449 | G | 1450 | * | C | 1462 | C | 1463 | cWW | cWW | ||
| 14 | IL_2XXA_013 | 2XXA | 0.7490 | 0 | G | SSRP RNA | G | 68 | A | 69 | U | 70 | * | G | 28 | C | 29 | cWW | cWW | ||
| 15 | IL_4GMA_001 | 4GMA | 0.7321 | 0 | Z | Adenosylcobalamin riboswitch | A | 7 | G | 8 | C | 9 | * | G | 176 | U | 177 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGG*CG | 3 |
| GACAU*AC | 2 |
| CCAG*CG | 2 |
| GUCG*CC | 1 |
| GACAG*CC | 1 |
| UAAC*GA | 1 |
| GUAG*CC | 1 |
| UAG*CA | 1 |
| GAG*CC | 1 |
| GAU*GC | 1 |
| AGC*GU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACA* | 3 |
| CG* | 3 |
| A* | 3 |
| CA* | 2 |
| UC* | 1 |
| AA* | 1 |
| UA* | 1 |
| G* | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_94430.4 | Only in the parent motif |
|---|---|---|---|
| IL_94430.3 Compare | IL_1FJG_039, IL_3V2F_068, IL_4GMA_001, IL_2QBG_072, IL_2AW7_046, IL_3V2F_032, IL_3V2F_055, IL_3Q1Q_003, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2AW7_007, IL_3U5H_145 | IL_4IOA_066, IL_4IOA_106 | IL_2ZJR_067, IL_2ZJR_105 |
Children motifs
| Child motif | Common motif instances | Only in IL_94430.4 | Only in the child motif |
|---|---|---|---|
| IL_94430.5 Compare | IL_1FJG_039, IL_3V2F_068, IL_4IOA_066, IL_4GMA_001, IL_2QBG_072, IL_2AW7_046, IL_3V2F_032, IL_3V2F_055, IL_4IOA_106, IL_3Q1Q_003, IL_2AW7_007, IL_2XXA_013, IL_1S72_066, IL_4A1B_086, IL_3U5H_145 | IL_4BPP_040 |
- Annotations
-
- (12)
- Minor groove platform, major groove intercalation (H) (2)
- Minor groove platform (H) (1)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.53 | Max 0.95
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