#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-32-4
1 IL_1FJG_0391FJG0.49222Minor groove platform (H)A SSU rRNAA1044C1045*G993A996U997cWWcWWcSW
2 IL_2AW7_0462AW70.51232A16S ribosomal RNAA1044C1045*G993A996U997cWWcWWcSW
3 IL_3Q1Q_0033Q1Q0.36342BRNase P RNAC209C210*G103A106G107cWWcWWcSW
4 IL_2AW7_0072AW70.40641A16S ribosomal RNAG97A98*U70A72C73cWWcWWcSW
5 IL_4BPP_0404BPP0.38421A18S RRNAA730C731*G785A787U788cWWcWWncSW
6 IL_4IOA_1064IOA0.33221Y 5S rRNAC32C33*G53C55G56cWWcWWntSH
7 IL_4IOA_0664IOA0.17261Major groove outside cWW, minor groove, intercalation pocket (H)X LSU rRNAC1885G1886*C1829G1831G1832cWWcWW
8 IL_1S72_0661S720.00001Major groove outside cWW, minor groove, intercalation pocket (H)0 LSU rRNAC1943G1944*C1893A1895G1896cWWcWW
9 IL_4A1B_0864A1B0.16701126S RRNAC2240G2241*C2191A2193G2194cWWcWW
10 IL_4NVV_0714NVV0.14251A23S Ribosomal RNAC1924G1925*C1868G1870G1871cWWcWWntSH
11 IL_2QBG_0722QBG0.17761B23S rRNAC1902G1903*C1837G1839G1840cWWcWWtSH
12 IL_3U5H_1453U5H0.5603175S rRNAC28C29*G49A51G52cWWcWWcSW
13 IL_4GMA_0014GMA0.79140ZAdenosylcobalamin riboswitchG176U177*A7G8C9cWWncWW
14 IL_2XXA_0132XXA0.87650G SSRP RNAG28C29*G68A69U70cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AC*GACAU2
CG*CCGG2
CG*CCAG2
CC*GACAG1
GA*UAAC1
AC*GAAU1
CC*GUCG1
CCGG*CG1
CC*GUAG1
GU*AGC1
GC*GAU1
Non-Watson-Crick part of the motif
SequenceCounts
*ACA3
*AA2
*CG2
*CA2
*UC1
CG*1
*UA1
*G1
*A1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_94430.6Only in the child motif
IL_94430.7
Compare
IL_1FJG_039, IL_4GMA_001, IL_2QBG_072, IL_4NVV_071, IL_2AW7_046, IL_4IOA_066, IL_4IOA_106, IL_3Q1Q_003, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2AW7_007, IL_4BPP_040, IL_3U5H_145IL_4CUV_152
Annotations
  • (11)
  • Major groove outside cWW, minor groove, intercalation pocket (H) (2)
  • Minor groove platform (H) (1)
  • Basepair signature
    cWW-cSW-cWW
    Heat map statistics
    Min 0.14 | Avg 0.48 | Max 0.93
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