Motif IL_94799.1 Version IL_94799.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX2_068 | 1VX2 | 0.0000 | 0 | 2 | 18S ribosomal RNA | C | 1415 | C | 1416 | C | 1417 | C | 1418 | C | 1419 | * | G | 1428 | G | 1429 | C | 1430 | G | 1431 | cWW | cWW | ||
| 2 | IL_4A1B_097 | 4A1B | 0.9330 | 0 | 1 | 26S RRNA | G | 2592 | G | 2593 | G | 2594 | G | 2595 | G | 2596 | * | U | 2418 | A | 2419 | G | 2420 | U | 2421 | cWW | tSH | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCCCC*GGCG | 1 |
| GGGGG*UAGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCC*GC | 1 |
| GGG*AG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_94799.1 | Only in the parent motif |
|---|---|---|---|
| IL_56250.1 Compare | IL_4A1B_097 | IL_1VX2_068 | IL_4NVV_028 |
Children motifs
| Child motif | Common motif instances | Only in IL_94799.1 | Only in the child motif |
|---|---|---|---|
| IL_92630.1 Compare | IL_4A1B_097 | IL_1VX2_068 | IL_4QCN_026 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-L-L-cWW
- Heat map statistics
- Min 0.93 | Avg 0.47 | Max 0.93
Coloring options: