Motif IL_56250.1 Version IL_56250.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_097 | 4A1B | 0.0000 | 1 | 1 | LSU rRNA | U | 2418 | A | 2419 | G | 2420 | U | 2421 | * | G | 2592 | G | 2593 | G | 2594 | G | 2596 | cWW | tHS | tHS | cWW |
| 2 | IL_4NVV_028 | 4NVV | 0.8499 | 1 | A | LSU rRNA | C | 893 | G | 895 | A | 896 | C | 897 | * | G | 973 | G | 974 | U | 975 | G | 976 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGU*GGGGG | 1 |
| CUGAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AG*GGG | 1 |
| UGA*GU | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_56250.1 | Only in the parent motif |
|---|---|---|---|
| IL_87064.1 Compare | IL_4NVV_028 | IL_4A1B_097 | IL_4A1B_029 |
| IL_54470.1 Compare | IL_4A1B_097 | IL_4NVV_028 |
Children motifs
| Child motif | Common motif instances | Only in IL_56250.1 | Only in the child motif |
|---|---|---|---|
| IL_94799.1 Compare | IL_4A1B_097 | IL_4NVV_028 | IL_1VX2_068 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-tHS-cWW
- Heat map statistics
- Min 0.85 | Avg 0.42 | Max 0.85
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