Motif IL_95601.1 Version IL_95601.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_083 | 4V9F | 0.9270 | 0 | Major groove platform | 0 | LSU rRNA | U | 2492 | C | 2493 | G | 2494 | * | U | 2528 | G | 2529 | cWW | cHH | cWW | |
| 2 | IL_5TBW_111 | 5TBW | 0.2880 | 1 | Major groove platform with intercalation | 1 | LSU rRNA | U | 2909 | A | 2910 | G | 2912 | * | U | 2891 | A | 2892 | cWW | tSH | cWW | |
| 3 | IL_4V9F_089 | 4V9F | 0.1115 | 1 | Major groove platform with intercalation | 0 | LSU rRNA | C | 2575 | A | 2576 | G | 2578 | * | U | 2557 | G | 2558 | cWW | ntSH | cWW | |
| 4 | IL_7RQB_099 | 7RQB | 0.0000 | 1 | Major groove platform with intercalation | 1A | LSU rRNA | C | 2540 | A | 2541 | G | 2543 | * | U | 2522 | G | 2523 | cWW | ntSH | cWW | |
| 5 | IL_4WF9_097 | 4WF9 | 0.0464 | 1 | Major groove platform with intercalation | X | LSU rRNA | C | 2567 | A | 2568 | G | 2570 | * | U | 2549 | G | 2550 | cWW | ntSH | cWW | |
| 6 | IL_5J7L_342 | 5J7L | 0.0782 | 1 | Major groove platform with intercalation | DA | LSU rRNA | C | 2540 | A | 2541 | G | 2543 | * | U | 2522 | G | 2523 | cWW | ntSH | cWW | |
| 7 | IL_7A0S_091 | 7A0S | 0.1135 | 1 | Major groove platform with intercalation | X | LSU rRNA | C | 2519 | A | 2520 | G | 2522 | * | U | 2501 | G | 2502 | cWW | cWW | ||
| 8 | IL_4KQY_004 | 4KQY | 0.4196 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 73 | A | 74 | G | 76 | * | C | 49 | G | 50 | cWW | ncSH | cWW | |
| 9 | IL_7A0S_062 | 7A0S | 0.8090 | 5 | Intercalated tWH | X | LSU rRNA | C | 1973 | U | 1974 | U | 1976 | * | A | 1686 | G | 1691 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*UG | 5 |
| UCG*UG | 1 |
| UAAG*UA | 1 |
| CAAG*CG | 1 |
| CUGU*ACUUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 7 |
| C* | 1 |
| UG*CUUU | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with intercalation (6)
- Minor groove platform (1)
- Major groove platform (1)
- Intercalated tWH (1)
- Basepair signature
- cWW-tSH-cWW
- Heat map statistics
- Min 0.05 | Avg 0.45 | Max 0.98
Coloring options: