Motif IL_96042.1 Version IL_96042.1 of this group appears in releases 3.12 to 3.36
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4GXY_009 | 4GXY | 0.7598 | 0 | Major groove minor groove platform with extra cWW | A | Adenosylcobalamin riboswitch | C | 105 | A | 106 | C | 107 | * | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | cWW | ntHS | cWW | ntSH | ||
| 2 | IL_4WF9_092 | 4WF9 | 0.1393 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | A | 2486 | U | 2487 | C | 2488 | * | G | 2516 | G | 2517 | U | 2518 | U | 2519 | U | 2520 | cWW | cwW | cWW | cSH | ||
| 3 | IL_4IOA_088 | 4IOA | 0.0000 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH | ||
| 4 | IL_4V9F_084 | 4V9F | 0.1954 | 0 | Major groove minor groove platform with extra cWW | 0 | LSU rRNA | G | 2494 | U | 2495 | C | 2496 | * | G | 2524 | G | 2525 | C | 2526 | U | 2527 | U | 2528 | cWW | cwW | cWW | cSH | ||
| 5 | IL_5J7L_337 | 5J7L | 0.2860 | 0 | Major groove minor groove platform with extra cWW | DA | LSU rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUC*GGUUU | 2 |
| CAC*GGAAG | 1 |
| GUC*GGCUU | 1 |
| AUA*UGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GUU | 3 |
| A*GAA | 1 |
| U*GCU | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform with extra cWW (4)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cWW-cSH-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.37 | Max 0.81
Coloring options: