Motif IL_96042.3 Version IL_96042.3 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-5 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_084 | 4V9F | 0.2216 | 0 | Major groove minor groove platform with extra cWW | 0 | LSU rRNA | G | 2494 | U | 2495 | C | 2496 | * | G | 2524 | G | 2525 | C | 2526 | U | 2527 | U | 2528 | cWW | cwW | cWW | cSH | |||
| 2 | IL_4WF9_092 | 4WF9 | 0.0980 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | A | 2486 | U | 2487 | C | 2488 | * | G | 2516 | G | 2517 | U | 2518 | U | 2519 | U | 2520 | cWW | cwW | cWW | cSH | |||
| 3 | IL_7A0S_086 | 7A0S | 0.0000 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | ncBW | cwW | cWW | cSH | ||
| 4 | IL_5J7L_337 | 5J7L | 0.2472 | 0 | Major groove minor groove platform with extra cWW | DA | LSU rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | cSH | |||
| 5 | IL_4WF9_012 | 4WF9 | 0.6407 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 304 | A | 305 | C | 306 | * | G | 409 | G | 410 | A | 411 | U | 412 | C | 413 | ncBW | ncWW | cWW | ncSW | |||
| 6 | IL_4GXY_009 | 4GXY | 0.7621 | 0 | Major groove minor groove platform with extra cWW | A | Adenosylcobalamin riboswitch | C | 105 | A | 106 | C | 107 | * | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | cWW | ntHS | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUC*GGUUU | 2 |
| GUC*GGCUU | 1 |
| AUA*UGUUU | 1 |
| GAC*GGAUC | 1 |
| CAC*GGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GUU | 3 |
| U*GCU | 1 |
| A*GAU | 1 |
| A*GAA | 1 |
- Annotations
-
- Major groove minor groove platform with extra cWW (6)
- Basepair signature
- cWW-cWW-cSH-R-cWW
- Heat map statistics
- Min 0.10 | Avg 0.42 | Max 0.81
Coloring options: