Motif IL_96332.1 Version IL_96332.1 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10	1-10	2-9	3-8	6-7
1	IL_4KZD_004	4KZD	0.1784	1	Tandem non-canonical cWW pairs	R	RNA (84-MER)	G	19	A	20	A	21	G	22	G	23	C	25	*	G	63	A	64	G	65	C	66	cWW	cWW		cWW
2	IL_4TS2_005	4TS2	0.1327	1	Tandem non-canonical cWW pairs	X+Y	Spinach aptamer RNA, bimolecular construct	G	22	A	23	A	24	G	25	G	26	C	28	*	G	74	A	75	G	76	C	77	cWW	cWW	ncwW	cWW
3	IL_7L0Z_002	7L0Z	0.0000	1		G	RNA (69-MER)	G	12	A	13	G	14	G	15	G	16	C	18	*	G	55	G	56	G	57	C	58	cWW	cWW	ncWB	cWW
4	IL_3NPQ_006	3NPQ	0.8570	0		A	SAH (S-adenosyl-L-homocysteine) riboswitch aptamer	C	26	C	27	C	28	A	29	G	30	G	31	*	C	16	A	17	A	18	G	19	cWW	ncWW	tSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAGGAC*GAGC	2
GAGGGUC*GGGC	1
CCCAGG*CAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAGGA*AG	2
AGGGU*GG	1
CCAG*AA	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	New id, 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Tandem non-canonical cWW pairs (2)
Basepair signature: cWW-cWW-L-R-L-cWW-L
Heat map statistics: Min 0.13 | Avg 0.39 | Max 0.90

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