IL_96706.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5	1-4	1-5	2-3	3-5	4-5
1	IL_3J7P_094	3J7P	0.5075	1	Major groove platform; stack outside cWW (H)	5	LSU rRNA	U	3840	C	3841	*	G	2847	G	2848	A	2850	tHS	cWW	cWW
2	IL_5J7L_306	5J7L	0.4429	1	Major groove platform; stack outside cWW	DA	LSU rRNA	U	1993	C	1994	*	G	1666	G	1667	A	1669	tHS	cWW	cWW
3	IL_3J79_075	3J79	0.4788	1		A	LSU rRNA	U	2629	C	2630	*	G	2166	G	2167	A	2169	tHS	cWW	cWW
4	IL_4V19_028	4V19	0.4691	1		A	LSU rRNA	U	986	C	987	*	G	799	G	800	A	802	tHS	cWW	cWW
5	IL_1G1X_001	1G1X	0.4203	1	Major groove platform; stack outside cWW	D+E	16S RIBOSOMAL RNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW		ncSH
6	IL_1G1X_004	1G1X	0.4205	1	Major groove platform; stack outside cWW	I+J	16S RIBOSOMAL RNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW		ncSH
7	IL_1FJG_027	1FJG	0.4035	1	Major groove platform; stack outside cWW (H)	A	SSU rRNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW		ncSH
8	IL_4V4Q_211	4V4Q	0.4087	1	Major groove platform; stack outside cWW (H)	CA	SSU rRNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW
9	IL_3J9W_026	3J9W	0.4404	1		AA	SSU rRNA	G	663	A	664	*	U	760	G	761	C	763	ntHS	cWW	cWW
10	IL_4QLM_004	4QLM	0.4577	1	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	G	39	G	40	*	C	91	G	92	C	94	tHS	cWW	cWW
11	IL_1FJG_024	1FJG	0.3035	0	Major groove platform (H)	A	SSU rRNA	G	644	C	645	*	G	594	G	595	C	596	ntHS	cWW	cWW		ncSH
12	IL_4V19_020	4V19	0.2452	1		A	LSU rRNA	U	543	C	544	*	G	529	A	531	A	532	ntHS	cWW	cWW		cSH
13	IL_3J7Y_024	3J7Y	0.2738	1		A	LSU rRNA	U	2211	C	2212	*	G	2197	A	2199	A	2200		cWW	cWW		cSH
14	IL_1QA6_004	1QA6	0.3869	1		D	58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN	U	151	C	152	*	G	137	A	139	A	140	ntHS	cWW	cWW		cSH
15	IL_3DIR_004	3DIR	0.3376	1		A	RNA (174-MER)	G	54	G	55	*	C	38	A	39	C	41		cWW	cWW
16	IL_5AJ0_033	5AJ0	0.3981	0		A2	LSU rRNA	C	649	C	650	*	G	491	C	492	G	493		cWW	cWW
17	IL_3P49_007	3P49	0.3989	0		A	Glycine riboswitch	G	38	A	39	*	U	49	U	50	C	51		ncWW	cWW		ncSH
18	IL_3J9W_087	3J9W	0.3010	0	Major groove platform (H)	BA	LSU rRNA	G	804	G	805	*	C	785	A	786	C	787		cWW	cWW		cSH
19	IL_5J7L_264	5J7L	0.2914	0	Major groove platform	DA	LSU rRNA	G	757	C	758	*	G	738	A	739	C	740		cWW	cWW		cSH
20	IL_4V19_036	4V19	0.2059	0	Major groove platform (H)	A	LSU rRNA	U	1438	A	1439	*	U	1043	A	1044	A	1045	ntHS	cWW	cWW		cSH
21	IL_5J7L_320	5J7L	0.2063	0	Major groove platform	DA	LSU rRNA	U	2617	G	2618	*	C	2050	A	2051	A	2052	tHS	cWW	cWW		cSH
22	IL_5FDU_079	5FDU	0.2613	0	Major groove platform (H)	1A	LSU rRNA	C	2629	G	2630	*	C	2072	A	2073	G	2074		cWW	cWW		cSH
23	IL_4IOA_073	4IOA	0.2616	0	Major groove platform (H)	X	LSU rRNA	C	2596	G	2597	*	C	2033	A	2034	G	2035		cWW	cWW		cSH
24	IL_3J9W_146	3J9W	0.3344	0	Major groove platform (H)	BA	LSU rRNA	C	2646	G	2647	*	C	2079	A	2080	G	2081		cWW	cWW		cSH
25	IL_3P49_010	3P49	0.3416	0		A	Glycine riboswitch	G	113	G	114	*	C	140	U	141	C	142		cWW	cWW		ncSH
26	IL_4V8P_410	4V8P	0.4573	0		F1	LSU rRNA	U	2850	G	2851	*	U	2814	U	2815	G	2816		cWW	cWW
27	IL_4V91_113	4V91	0.4849	0	Major groove platform (H)	1	LSU rRNA	U	2862	G	2863	*	U	2826	U	2827	G	2828		cWW	cWW
28	IL_5AJ0_148	5AJ0	0.4853	0	Major groove platform (H)	A2	LSU rRNA	U	4401	G	4402	*	U	4365	U	4366	G	4367		cWW	cWW
29	IL_3J79_101	3J79	0.4902	0	Major groove platform (H)	A	LSU rRNA	U	3221	G	3222	*	U	3185	U	3186	G	3187		cWW	cWW
30	IL_3J7P_120	3J7P	0.4597	0		5	LSU rRNA	U	4439	G	4440	*	U	4403	U	4404	G	4405		cWW	ncWW
31	IL_4V8P_323	4V8P	0.3227	0		F1	LSU rRNA	U	473	G	474	*	U	503	A	504	A	505		cWW	ncWW		ncSH
32	IL_4IOA_087	4IOA	0.2809	0		X	LSU rRNA	U	2472	G	2473	*	U	2436	G	2437	A	2438	ntHS	cWW	cWW
33	IL_5FDU_095	5FDU	0.2697	0	Major groove platform (H)	1A	LSU rRNA	U	2505	G	2506	*	U	2469	G	2470	A	2471	ntHS	cWW	cWW
34	IL_4V4Q_208	4V4Q	0.2595	0	Major groove platform (H)	CA	SSU rRNA	U	644	G	645	*	U	594	A	595	A	596		cWW	cWW		ncSH
35	IL_1I6U_001	1I6U	0.2647	0	Major groove platform	C	16S RRNA FRAGMENT	U	28	G	29	*	U	9	A	10	A	11	ntHS	cWW	cWW		cSH
36	IL_3J9W_022	3J9W	0.2803	0	Major groove platform (H)	AA	SSU rRNA	U	653	G	654	*	U	603	A	604	A	605	ntHS	cWW	cWW		cSH
37	IL_4V9F_044	4V9F	0.2749	1	Major groove platform	0	LSU rRNA	U	1205	U	1206	*	A	1191	A	1193	A	1194	ntHS	cWW	cWW		cSH
38	IL_1S03_004	1S03	0.1513	0	Major groove platform	A	47-MER	U	16	G	17	*	C	34	A	35	A	36	tHS	cWW	cWW		cSH
39	IL_1S03_008	1S03	0.1619	0	Major groove platform	B	47-MER	U	16	G	17	*	C	34	A	35	A	36	tHS	cWW	cWW		cSH
40	IL_4L81_002	4L81	0.1529	0		A	SAM-I/IV variant riboswitch aptamer domain	U	29	G	30	*	C	42	A	43	A	44	ntHS	cWW	cWW		ncSH
41	IL_4IOA_086	4IOA	0.0824	0	Major groove platform (H)	X	LSU rRNA	G	2433	G	2434	*	C	2475	A	2476	C	2477		cWW	cWW		ncSH
42	IL_5FDU_094	5FDU	0.0000	0		1A	LSU rRNA	G	2466	G	2467	*	C	2508	A	2509	C	2510		cWW	cWW		cSH
43	IL_4V9F_082	4V9F	0.1129	0	Major groove platform	0	LSU rRNA	G	2489	A	2490	*	U	2531	A	2532	C	2533		cWW	cWW		cSH
44	IL_3J9W_161	3J9W	0.1593	0	Major groove platform (H)	BA	LSU rRNA	G	2483	G	2484	*	C	2525	A	2526	C	2527		cWW	cWW		cSH
45	IL_3D0U_004	3D0U	0.1873	1	Major groove platform; stack outside cWW	A	Lysine Riboswitch RNA	G	51	G	52	*	C	35	A	36	C	38		cWW	cWW		cSH
46	IL_3JCS_101	3JCS	0.2388	0	Major groove platform (H)	2	LSU rRNA	G	1262	G	1263	*	U	1304	C	1305	C	1306		cWW	cWW	ncSH	cSH
47	IL_3OX0_003	3OX0	0.1684	0		A	Domain II of glycine riboswitch	G	35	G	36	*	C	68	U	69	C	70		cWW	cWW		cSH
48	IL_1FJG_028	1FJG	0.2824	0	Major groove platform (H)	A	SSU rRNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW		ncSH
49	IL_1G1X_005	1G1X	0.2522	0	Major groove platform	I+J	16S RIBOSOMAL RNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW		ncSH
50	IL_1G1X_002	1G1X	0.2693	0	Major groove platform	D+E	16S RIBOSOMAL RNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW		ncSH
51	IL_5FDU_009	5FDU	0.2378	0	Major groove platform (H)	1A	LSU rRNA	G	291	G	292	*	U	392	A	393	C	394		cWW	cWW		ncSH
52	IL_1XJR_002	1XJR	0.2344	0	Major groove platform	A	s2m RNA	G	13	G	14	*	U	37	A	38	C	39		cWW	cWW		cSH
53	IL_4IOA_084	4IOA	0.2230	0	Major groove platform	X	LSU rRNA	G	2393	G	2394	*	U	2380	A	2381	C	2382		cWW	cWW
54	IL_5FDU_092	5FDU	0.2531	0	Major groove platform (H)	1A	LSU rRNA	G	2426	G	2427	*	U	2413	C	2414	C	2415		cWW	cWW		ncSH
55	IL_5AN9_035	5AN9	0.2553	0		N	LSU rRNA	G	3156	G	3157	*	U	3198	C	3199	C	3200		cWW	cWW	ncSH
56	IL_5AJ0_146	5AJ0	0.2145	0	Major groove platform (H)	A2	LSU rRNA	G	4362	G	4363	*	U	4404	C	4405	C	4406		cWW	cWW		cSH
57	IL_3J79_099	3J79	0.2580	0	Major groove platform (H)	A	LSU rRNA	G	3182	G	3183	*	U	3224	C	3225	C	3226		cWW	cWW
58	IL_4V91_111	4V91	0.2745	0	Major groove platform (H)	1	LSU rRNA	G	2823	G	2824	*	U	2865	U	2866	C	2867		cWW	cWW	ncSH
59	IL_4V88_349	4V88	0.2785	0	Major groove platform (H)	A5	LSU rRNA	G	2823	G	2824	*	U	2865	U	2866	C	2867		cWW	cWW	ncSH	cSH
60	IL_4V8P_408	4V8P	0.2618	0		F1	LSU rRNA	G	2811	G	2812	*	U	2853	C	2854	C	2855		cWW	cWW		ncSH
61	IL_3J7P_118	3J7P	0.3489	0	Major groove platform (H)	5	LSU rRNA	G	4400	G	4401	*	U	4442	C	4443	C	4444			ncWW		ncSH
62	IL_3J7Y_047	3J7Y	0.3622	0	Major groove platform (H)	A	LSU rRNA	G	2941	C	2942	*	G	2983	A	2984	C	2985		cWW	cWW
63	IL_4V19_045	4V19	0.3598	0	Major groove platform (H)	A	LSU rRNA	G	1275	C	1276	*	G	1317	A	1318	C	1319		cWW	cWW		ncSH
64	IL_3NKB_002	3NKB	0.2712	0	Major groove platform	B	The hepatitis delta virus ribozyme	U	47	C	48	*	G	55	U	56	A	57		cWW	cWW		cSH
65	IL_4BTS_336	4BTS	0.3159	0		DA	SSU rRNA	U	1469	C	1470	*	G	1479	U	1480	A	1481		cWW	cWW		ncSH
66	IL_3Q1Q_001	3Q1Q	0.4886	0		B	RNase P RNA	G	328	C	329	*	G	51	U	52	C	53		cWW	cWW		ncSH
67	IL_3SUX_002	3SUX	0.5039	0	Major groove platform	X	THF riboswitch	G	37	A	38	*	U	47	G	48	U	49		cWW	ncWW
68	IL_3SUX_005	3SUX	0.5039	0	Major groove platform	X	THF riboswitch	G	37\|\|\|\|17_555	A	38\|\|\|\|17_555	*	U	47\|\|\|\|17_555	G	48\|\|\|\|17_555	U	49\|\|\|\|17_555		cWW	ncWW
69	IL_4V8P_389	4V8P	0.5716	1		F1	LSU rRNA	U	2195	G	2196	*	U	2236	A	2237	A	2239		cWW	cWW
70	IL_5A2Q_092	5A2Q	0.6489	0		3	IRES	C	114	C	115	*	G	47	U	48	G	49		cWW	cWW
71	IL_3J9W_176	3J9W	0.7611	0	Major groove intercalation (H)	BA	LSU rRNA	G	2863	G	2864	*	U	2903	A	2904	C	2905		cWW	cWW
72	IL_5J7L_352	5J7L	0.7711	0	Major groove intercalation	DA	LSU rRNA	G	2838	G	2839	*	U	2878	A	2879	C	2880		cWW	cWW
73	IL_3J9W_132	3J9W	0.6647	1	Major groove platform; stack outside cWW (H)	BA	LSU rRNA	U	2022	C	2023	*	G	1711	G	1712	A	1714		cWW	cWW
74	IL_3J7Y_052	3J7Y	0.6731	0	Major groove platform (H)	A	LSU rRNA	U	2994	G	2995	*	U	3067	G	3068	A	3069		cWW	cWW
75	IL_3J7P_123	3J7P	0.6673	0		5	LSU rRNA	C	4453	G	4454	*	U	4526	G	4527	G	4528		cWW	ncWW
76	IL_5AN9_040	5AN9	0.6675	0	Major groove platform (H)	N	LSU rRNA	C	3209	G	3210	*	U	3282	G	3283	G	3284		cWW	cWW
77	IL_3J9W_165	3J9W	0.6318	0	Major groove platform (H)	BA	LSU rRNA	C	2536	G	2537	*	U	2609	G	2610	G	2611		cWW	cWW		chH
78	IL_4V19_049	4V19	0.6717	0	Major groove platform (H)	A	LSU rRNA	U	1328	G	1329	*	U	1401	G	1402	A	1403		cWW	cWW
79	IL_4V91_116	4V91	0.6736	0	Major groove platform (H)	1	LSU rRNA	C	2876	G	2877	*	U	2949	G	2950	G	2951		cWW	cWW
80	IL_4V8P_413	4V8P	0.6721	0	Major groove platform (H)	F1	LSU rRNA	C	2864	G	2865	*	U	2937	G	2938	G	2939		cWW	cWW
81	IL_3J79_104	3J79	0.6816	0	Major groove platform (H)	A	LSU rRNA	C	3235	G	3236	*	U	3308	G	3309	G	3310		cWW	cWW
82	IL_5AJ0_151	5AJ0	0.6754	0	Major groove platform (H)	A2	LSU rRNA	C	4415	G	4416	*	U	4488	G	4489	G	4490		cWW	cWW
83	IL_3JCS_103	3JCS	0.6683	0	Major groove platform (H)	2	LSU rRNA	C	1315	G	1316	*	U	1388	G	1389	G	1390		cWW	cWW		chH
84	IL_4IOA_090	4IOA	0.6615	0	Major groove platform (H)	X	LSU rRNA	C	2486	G	2487	*	U	2559	G	2560	G	2561		cWW	cWW		chH
85	IL_3J79_066	3J79	0.6632	0		A	LSU rRNA	C	1823	A	1824	*	U	2001	G	2002	G	2003		cWW	cWW		chH
86	IL_3J9W_162	3J9W	0.6606	0		BA	LSU rRNA	U	2522	G	2523	*	U	2486	U	2487	A	2488		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CG*UGG	9
GG*UCC	7
UC*GGAA	5
GA*UGAC	5
UG*UUG	5
GG*UAC	5
GG*CAC	4
UG*CAA	4
UG*UAA	4
UG*UGA	4
UC*GAAA	3
GC*GAC	3
CG*CAG	3
GG*CCC	3
GG*CAUC	2
GG*CUC	2
GG*UUC	2
UC*GUA	2
GA*UGU	2
GG*CGUC	1
GC*GGC	1
CC*GCG	1
GA*UUC	1
UA*UAA	1
UU*AAAA	1
GA*UAC	1
GC*GUC	1
UG*UAAA	1
CC*GUG	1
CA*UGG	1
UG*UUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	25
*G	17
*U	15
*C	11
*GA	10
*AA	5
*AU	2
*GU	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_96706.1 Version IL_96706.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_96706.1 Version IL_96706.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json