Motif IL_97152.1 Version IL_97152.1 of this group appears in releases 3.15 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 3-7 | 4-5 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_464 | 4V88 | 0.7041 | 0 | A6 | SSU rRNA | G | 1638 | C | 1639 | C | 1640 | C | 1641 | * | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | cWW | cWW | cSW | cWW | cSH | ||
| 2 | IL_3LOA_001 | 3LOA | 0.3815 | 0 | UAA/GAN variation | A+B | RNA (21-mer) + RNA (23-mer) | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | ncWW | cWW | |||
| 3 | IL_5J7L_010 | 5J7L | 0.1041 | 0 | Minor groove platform related | AA | SSU rRNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | G | 134 | C | 135 | C | 136 | cWW | cWw | cWW | |||
| 4 | IL_4LFB_008 | 4LFB | 0.0000 | 0 | A | SSU rRNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | cWW | cWw | cWW | ||||
| 5 | IL_3CUL_001 | 3CUL | 0.5638 | 1 | C | RNA (92-MER) | C | 22 | A | 23 | G | 24 | G | 25 | * | U | 44 | A | 45 | U | 47 | G | 48 | G | 49 | cWW | cWW | cWB | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCC*GUAAC | 2 |
| GAUG*CUGCC | 1 |
| GAUG*CUACC | 1 |
| CAGG*UAUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CC*UAA | 2 |
| AU*UGC | 1 |
| AU*UAC | 1 |
| AG*AUUG | 1 |
- Annotations
-
- (3)
- UAA/GAN variation (1)
- Minor groove platform related (1)
- Basepair signature
- cWW-cWW-R-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.46 | Max 0.97
Coloring options: