Motif IL_97255.2 Version IL_97255.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-8 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_440 | 8P9A | 0.7981 | 2 | Minor groove platform with extra cWW (H) | sR | SSU rRNA | U | 1430 | C | 1431 | G | 1433 | U | 1434 | A | 1436 | * | U | 1276 | G | 1277 | G | 1278 | cWW | tHS | ncWWa | cWW | |
| 2 | IL_5UNE_002 | 5UNE | 0.3601 | 1 | Isolated basepair with bulged bases | B+A | RNA (47-MER) | C | 33 | G | 34 | G | 35 | A | 37 | A | 38 | * | U | 10 | G | 11 | G | 12 | cWW | ntSH | cWW | ||
| 3 | IL_6CZR_172 | 6CZR | 0.0000 | 1 | Isolated basepair with bulged bases | 1a | SSU rRNA | C | 1423 | G | 1424 | G | 1425 | A | 1427 | G | 1428 | * | C | 1437 | A | 1438 | G | 1439 | cWW | tSH | cWW | ||
| 4 | IL_4LFB_064 | 4LFB | 0.3743 | 1 | A | SSU rRNA | C | 1440 | G | 1441 | G | 1442 | A | 1446 | G | 1447 | * | C | 1459 | A | 1460 | G | 1461 | cWW | tSH | cWW | |||
| 5 | IL_1XJR_001 | 1XJR | 0.4514 | 0 | Isolated basepair with bulged bases | A | s2m RNA | C | 9 | C | 10 | G | 11 | A | 12 | G | 13 | * | C | 39 | A | 40 | G | 41 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGGAG*CAG | 2 |
| UCUGUGA*UGG | 1 |
| CGGAAA*UGG | 1 |
| CCGAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGA*A | 2 |
| CUGUG*G | 1 |
| GGAA*G | 1 |
| CGA*A | 1 |
- Annotations
-
- Isolated basepair with bulged bases (3)
- (1)
- Minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-tSH-L-cWW-L
- Heat map statistics
- Min 0.36 | Avg 0.47 | Max 0.88
Coloring options: