Motif IL_98016.2 Version IL_98016.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KXK_001 | 1KXK | 0.5322 | 1 | A | ai5g group II Self-splicing intron | G | 61 | G | 62 | * | U | 8 | U | 10 | C | 11 | cWW | cWW | |
| 2 | IL_4IOA_094 | 4IOA | 0.5258 | 0 | Single bulged A (H) | X | LSU rRNA | C | 2570 | G | 2571 | * | C | 2580 | A | 2581 | G | 2582 | cWW | cWW |
| 3 | IL_2QBG_032 | 2QBG | 0.0000 | 0 | B | 23S rRNA | G | 862 | A | 863 | * | U | 913 | G | 914 | C | 915 | cWW | cWW | |
| 4 | IL_4A1B_032 | 4A1B | 0.5005 | 0 | 1 | 26S RRNA | A | 779 | C | 780 | * | G | 800 | U | 801 | U | 802 | cWW | cWW | |
| 5 | IL_4W23_009 | 4W23 | 0.5546 | 1 | 2 | 18S ribosomal RNA | A | 348 | A | 349 | * | U | 112 | G | 114 | U | 115 | ncWW | ncWW | |
| 6 | IL_1VW3_026 | 1VW3 | 0.6938 | 0 | A | 21S ribosomal RNA | C | 785 | A | 786 | * | U | 839 | C | 840 | G | 841 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*UAUC | 1 |
| CG*CAG | 1 |
| GA*UGC | 1 |
| AC*GUU | 1 |
| AA*UGGU | 1 |
| CA*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AU | 1 |
| *A | 1 |
| *G | 1 |
| *U | 1 |
| *GG | 1 |
| *C | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_98016.2 | Only in the parent motif |
|---|---|---|---|
| IL_98016.1 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032, IL_4IOA_094, IL_1VW3_026 | IL_4W23_009 | IL_1X8W_004, IL_1VX2_009 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Single bulged A (H) (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.47 | Avg 0.53 | Max 0.87
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