Motif IL_98016.1 Version IL_98016.1 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5	1-5	2-3	3-4
1	IL_1KXK_001	1KXK	0.5322	1		A	ai5g group II Self-splicing intron	G	61	G	62	*	U	8	U	10	C	11	cWW	cWW
2	IL_4IOA_094	4IOA	0.5258	0	Single bulged A (H)	X	LSU rRNA	C	2570	G	2571	*	C	2580	A	2581	G	2582	cWW	cWW
3	IL_2QBG_032	2QBG	0.0000	0		B	23S rRNA	G	862	A	863	*	U	913	G	914	C	915	cWW	cWW
4	IL_1VX2_009	1VX2	0.5060	1		2	18S ribosomal RNA	A	348	A	349	*	U	112	G	114	U	115
5	IL_1VW3_026	1VW3	0.6938	0		A	21S ribosomal RNA	C	785	A	786	*	U	839	C	840	G	841	cWW	cWW
6	IL_4A1B_032	4A1B	0.5005	0		1	26S RRNA	A	779	C	780	*	G	800	U	801	U	802	cWW	cWW
7	IL_1X8W_004	1X8W	0.6144	0		A	Tetrahymena ribozyme RNA	A	192	C	193	*	G	129	U	130	U	131	cWW	cWW	ncSH

3D structures

Complete motif including flanking bases

Sequence	Counts
AC*GUU	2
GG*UAUC	1
CG*CAG	1
GA*UGC	1
UGGU*AA	1
CA*UCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*U	2
*AU	1
*A	1
*G	1
GG*	1
*C	1

Release history

Release	1.17
Date	2014-09-04
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_98016.1	Only in the parent motif
IL_09698.1 Compare	IL_1KXK_001, IL_4A1B_032, IL_2QBG_032	IL_1X8W_004, IL_4IOA_094, IL_1VX2_009, IL_1VW3_026	IL_2OZB_001, IL_3U5H_046
IL_30323.1 Compare	IL_4IOA_094, IL_1VW3_026	IL_1KXK_001, IL_4A1B_032, IL_1X8W_004, IL_2QBG_032, IL_1VX2_009
IL_44540.6 Compare	IL_1X8W_004	IL_2QBG_032, IL_1KXK_001, IL_4A1B_032, IL_1VX2_009, IL_1VW3_026, IL_4IOA_094	IL_4CUV_102, IL_4CUV_044, IL_2QBG_081, IL_4BPP_069, IL_2AW7_050, IL_1FJG_004, IL_4IOA_076, IL_2QBG_008, IL_2AW7_004, IL_2QWY_006, IL_1FJG_042, IL_2GDI_007, IL_2QWY_003, IL_2AW7_035, IL_2GDI_003, IL_1VW3_065, IL_4CUX_068, IL_3U5F_062, IL_1Y0Q_003, IL_4NVV_003, IL_4BPP_005, IL_4CUX_028, IL_4CUX_029, IL_4BPP_059, IL_3IWN_001, IL_1FJG_038, IL_4NVV_081, IL_2AW7_045, IL_3U5F_029, IL_4A1B_020, IL_2AW7_067, IL_4A1B_049, IL_4A1B_128, IL_1FJG_052, IL_1FJG_051, IL_1S72_075, IL_4IOA_027, IL_3RW6_001, IL_4IOA_003, IL_1S72_033, IL_1U6B_007, IL_3U5F_071, IL_1S72_035, IL_4NVV_073, IL_3U5H_041, IL_3U5F_005, IL_4NVV_030, IL_4A1B_096, IL_4CUX_058, IL_3U5H_099

Children motifs

Child motif	Common motif instances	Only in IL_98016.1	Only in the child motif
IL_98016.2 Compare	IL_1KXK_001, IL_4A1B_032, IL_2QBG_032, IL_4IOA_094, IL_1VW3_026	IL_1X8W_004, IL_1VX2_009	IL_4W23_009
IL_44540.8 Compare	IL_1X8W_004	IL_2QBG_032, IL_1KXK_001, IL_4A1B_032, IL_1VX2_009, IL_1VW3_026, IL_4IOA_094	IL_4W21_124, IL_4CUV_102, IL_4CUV_044, IL_2QBG_081, IL_4BPP_069, IL_2AW7_050, IL_1FJG_004, IL_4IOA_076, IL_4CUX_068, IL_2QBG_008, IL_1FJG_052, IL_2QWY_006, IL_1FJG_042, IL_2GDI_007, IL_2QWY_003, IL_2AW7_035, IL_2GDI_003, IL_1VW3_065, IL_4W23_057, IL_4QCN_069, IL_1Y0Q_003, IL_4QCN_003, IL_3J7A_004, IL_4CUX_028, IL_4CUX_029, IL_4BPP_059, IL_4W21_016, IL_3IWN_001, IL_4QCN_028, IL_1VX6_046, IL_1VX6_101, IL_3J7A_060, IL_1FJG_038, IL_3U5F_029, IL_2AW7_045, IL_3U5H_041, IL_4A1B_020, IL_2AW7_067, IL_4A1B_049, IL_4A1B_128, IL_2AW7_004, IL_1FJG_051, IL_1S72_075, IL_4IOA_027, IL_3RW6_001, IL_4IOA_003, IL_3U5F_062, IL_4W21_066, IL_1S72_033, IL_1U6B_007, IL_3U5F_071, IL_1S72_035, IL_4QCN_077, IL_3J7A_031, IL_4W21_042, IL_3U5F_005, IL_3J7A_055, IL_4A1B_096, IL_4CUX_058, IL_4BPP_005, IL_3U5H_099

Annotations: (6)
Single bulged A (H) (1)
Basepair signature: cWW-R-cWW
Heat map statistics: Min 0.29 | Avg 0.55 | Max 0.91

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