Motif IL_98073.2 Version IL_98073.2 of this group appears in releases 1.17 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14		15		16	1-16	2-15	3-14	4-13	5-12	6-11	7-10	8-9
1	IL_4CUV_005	4CUV	0.0829	1	1	LSU rRNA	C	31	U	32	G	33	A	34	A	35	C	36	U	37	U	38	*	A	45	U	46	C	47	A	48	U	50	A	51	A	52	G	53	cWW	ntSH	tSH	ntHW	tHH	tHS	cWw	cWW
2	IL_3U5H_005	3U5H	0.0000	1	5	LSU rRNA	C	31	U	32	G	33	A	34	A	35	C	36	U	37	U	38	*	A	45	U	46	C	47	A	48	U	50	A	51	A	52	G	53	cWW		tSH	tHW	tHH	tHS	cWw	cWW
3	IL_1VX6_003	1VX6	0.0946	1	A	LSU rRNA	C	31	C	32	G	33	A	34	A	35	U	36	U	37	U	38	*	A	45	U	46	A	47	A	48	U	50	A	51	A	52	G	53	cWW	ncWW	tSH	tHW	tHH		cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGAACUU*AUCAAUAAG	2
CCGAAUUU*AUAAUUAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAACU*UCAAUAA	2
CGAAUU*UAAUUAA	1

Release history

Release	1.17	1.18
Date	2014-09-04	2014-10-07
Status	Updated, 1 parent	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_98073.2	Only in the parent motif
IL_98073.1 Compare	IL_3U5H_005, IL_4CUV_005	IL_1VX6_003

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
Heat map statistics: Min 0.08 | Avg 0.06 | Max 0.10

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Coloring options: Nucleotide numbers

Motif IL_98073.2 Version IL_98073.2 of this group appears in releases 1.17 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_98073.2 Version IL_98073.2 of this group appears in releases 1.17 to 1.18

Download

Csv

Json