Motif IL_98073.1 Version IL_98073.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 3-14 | 4-13 | 5-12 | 6-11 | 7-10 | 8-9 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_005 | 3U5H | 0.0000 | 1 | 5 | 25S rRNA | C | 31 | U | 32 | G | 33 | A | 34 | A | 35 | C | 36 | U | 37 | U | 38 | * | A | 45 | U | 46 | C | 47 | A | 48 | U | 50 | A | 51 | A | 52 | G | 53 | cWW | tSH | tHW | tHH | tHS | cWw | cWW | |
| 2 | IL_4CUV_005 | 4CUV | 0.0829 | 1 | 1 | 25S RRNA | C | 31 | U | 32 | G | 33 | A | 34 | A | 35 | C | 36 | U | 37 | U | 38 | * | A | 45 | U | 46 | C | 47 | A | 48 | U | 50 | A | 51 | A | 52 | G | 53 | cWW | ntSH | tSH | ntHW | tHH | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAACUU*AUCAAUAAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAACU*UCAAUAA | 2 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_98073.1 | Only in the parent motif |
|---|---|---|---|
| IL_54954.1 Compare | IL_3U5H_005 | IL_4CUV_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_98073.1 | Only in the child motif |
|---|---|---|---|
| IL_98073.2 Compare | IL_3U5H_005, IL_4CUV_005 | IL_1VX6_003 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: