Motif IL_98421.7 Version IL_98421.7 of this group appears in releases 1.17 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7	1-7	2-6	3-7	5-6
1	IL_3U5H_123	3U5H	0.0000	2		5	25S rRNA	U	3047	A	3048	A	3049	U	3050	U	3051	*	A	3091	A	3094	cWW	tHH		cWW
2	IL_1VX6_124	1VX6	0.1074	1		A	28S ribosomal RNA	C	3433	A	3434	A	3435	U	3436	U	3437	*	A	3476	G	3478	cWW	tHH		cWW
3	IL_4CUV_128	4CUV	0.1300	2		1	25S RRNA	U	3047	A	3048	A	3049	U	3050	U	3051	*	A	3091	A	3094	cWW	tHH		cWW
4	IL_1FJG_013	1FJG	0.7839	0	C-loop (H)	A	SSU rRNA	U	304	G	305	G	306	C	307	C	308	*	G	292	G	293	cWW		ntHS	cWW
5	IL_2AW7_016	2AW7	0.8013	0		A	16S ribosomal RNA	U	304	G	305	A	306	C	307	C	308	*	G	292	G	293	cWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAAUU*ACCA	2
CAAUU*AAG	1
UGGCC*GG	1
UGACC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAU*CC	2
AAU*A	1
GGC*	1
GAC*	1

Release history

Release	1.17	1.18
Date	2014-09-04	2014-10-07
Status	Updated, 1 parent	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_98421.7	Only in the parent motif
IL_98421.6 Compare	IL_4CUV_128, IL_1FJG_013, IL_2AW7_016, IL_3U5H_123	IL_1VX6_124

Children motifs

This motif has no children motifs.

Annotations: (4)
C-loop (H) (1)
Basepair signature: cWW-tHH-L-L-cWW
Heat map statistics: Min 0.11 | Avg 0.44 | Max 0.82

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Coloring options: Nucleotide numbers

Motif IL_98421.7 Version IL_98421.7 of this group appears in releases 1.17 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_98421.7 Version IL_98421.7 of this group appears in releases 1.17 to 1.18

Download

Csv

Json