Motif IL_98421.6 Version IL_98421.6 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 2-6 | 3-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_123 | 3U5H | 0.1300 | 2 | 5 | LSU rRNA | U | 3047 | A | 3048 | A | 3049 | U | 3050 | U | 3051 | * | A | 3091 | A | 3094 | cWW | tHH | cWW | ||
| 2 | IL_4CUV_128 | 4CUV | 0.0000 | 2 | 1 | LSU rRNA | U | 3047 | A | 3048 | A | 3049 | U | 3050 | U | 3051 | * | A | 3091 | A | 3094 | cWW | tHH | cWW | ||
| 3 | IL_1FJG_013 | 1FJG | 0.7704 | 0 | C-loop (H) | A | SSU rRNA | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | ntHS | cWW | |
| 4 | IL_2AW7_016 | 2AW7 | 0.8099 | 0 | A | SSU rRNA | U | 304 | G | 305 | A | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAUU*ACCA | 2 |
| UGGCC*GG | 1 |
| UGACC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU*CC | 2 |
| GGC* | 1 |
| GAC* | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_98421.6 | Only in the parent motif |
|---|---|---|---|
| IL_98421.5 Compare | IL_1FJG_013, IL_2AW7_016, IL_3U5H_123 | IL_4CUV_128 |
Children motifs
| Child motif | Common motif instances | Only in IL_98421.6 | Only in the child motif |
|---|---|---|---|
| IL_98421.7 Compare | IL_4CUV_128, IL_1FJG_013, IL_2AW7_016, IL_3U5H_123 | IL_1VX6_124 |
- Annotations
-
- (3)
- C-loop (H) (1)
- Basepair signature
- cWW-tHH-L-L-cWW
- Heat map statistics
- Min 0.13 | Avg 0.46 | Max 0.81
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