Motif IL_98421.6 Version IL_98421.6 of this group appears in releases 1.15 to 1.15

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7	1-7	2-6	3-7	5-6
1	IL_3U5H_123	3U5H	0.1300	2		5	25S rRNA	U	3047	A	3048	A	3049	U	3050	U	3051	*	A	3091	A	3094	cWW	tHH		cWW
2	IL_4CUV_128	4CUV	0.0000	2		1	25S RRNA	U	3047	A	3048	A	3049	U	3050	U	3051	*	A	3091	A	3094	cWW	tHH		cWW
3	IL_1FJG_013	1FJG	0.7704	0	C-loop (H)	A	SSU rRNA	U	304	G	305	G	306	C	307	C	308	*	G	292	G	293	cWW		ntHS	cWW
4	IL_2AW7_016	2AW7	0.8099	0		A	16S ribosomal RNA	U	304	G	305	A	306	C	307	C	308	*	G	292	G	293	cWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAAUU*ACCA	2
UGGCC*GG	1
UGACC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAU*CC	2
GGC*	1
GAC*	1

Release history

Release	1.15
Date	2014-06-20
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_98421.6	Only in the parent motif
IL_98421.5 Compare	IL_1FJG_013, IL_2AW7_016, IL_3U5H_123	IL_4CUV_128

Children motifs

Child motif	Common motif instances	Only in IL_98421.6	Only in the child motif
IL_98421.7 Compare	IL_4CUV_128, IL_1FJG_013, IL_2AW7_016, IL_3U5H_123		IL_1VX6_124

Annotations: (3)
C-loop (H) (1)
Basepair signature: cWW-tHH-L-L-cWW
Heat map statistics: Min 0.13 | Avg 0.46 | Max 0.81

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