Motif IL_98556.4 Version IL_98556.4 of this group appears in releases 1.0 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZI0_001 | 2ZI0 | 0.8727 | 0 | Isolated near basepair | C+D | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW |
| 2 | IL_1QA6_001 | 1QA6 | 0.1672 | 2 | C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | G | 109 | U | 110 | G | 112 | * | C | 126 | A | 127 | C | 129 | cWW | cWW | |
| 3 | IL_2QBG_043 | 2QBG | 0.0000 | 2 | B | 23S rRNA | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | C | 1079 | cWW | cWW | |
| 4 | IL_2ZJR_038 | 2ZJR | 0.1692 | 2 | X | LSU rRNA | G | 1070 | U | 1071 | G | 1073 | * | C | 1087 | A | 1088 | C | 1090 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUA*UUA | 1 |
| GUAG*CAUC | 1 |
| GUUG*CAUC | 1 |
| GUUG*CACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*U | 1 |
| UA*AU | 1 |
| UU*AU | 1 |
| UU*AC | 1 |
Release history
| Release | 1.0 |
|---|---|
| Date | 2013-03-04 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_98556.4 | Only in the parent motif |
|---|---|---|---|
| IL_98556.3 Compare | IL_2QBG_043, IL_2ZJR_038, IL_1QA6_001 | IL_2ZI0_001 | IL_3ZD3_002 |
| IL_34156.4 Compare | IL_2ZI0_001 | IL_2QBG_043, IL_2ZJR_038, IL_1QA6_001 | IL_3U5F_012, IL_1SI3_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_98556.4 | Only in the child motif |
|---|---|---|---|
| IL_42251.1 Compare | IL_2QBG_043, IL_1QA6_001 | IL_2ZJR_038, IL_2ZI0_001 | IL_4FNJ_003, IL_1U6B_009 |
| IL_34156.6 Compare | IL_2ZI0_001 | IL_2QBG_043, IL_2ZJR_038, IL_1QA6_001 | IL_3U5F_012, IL_1SI3_001 |
- Annotations
-
- (3)
- Isolated near basepair (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.17 | Avg 0.40 | Max 0.89
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