Motif IL_34156.6 Version IL_34156.6 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_012 | 3U5F | 0.2821 | 0 | 6 | 18S rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 2 | IL_1SI3_001 | 1SI3 | 0.0000 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | * | U | 403 | G | 404 | A | 405 | cWW | cWW |
| 3 | IL_2ZI0_001 | 2ZI0 | 0.6391 | 0 | Isolated near basepair | C+D | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGU*AGA | 1 |
| UGA*UGA | 1 |
| UUA*UUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 2 |
| U*U | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_34156.6 | Only in the parent motif |
|---|---|---|---|
| IL_34156.5 Compare | IL_3U5F_012, IL_1SI3_001 | IL_2ZI0_001 | |
| IL_98556.4 Compare | IL_2ZI0_001 | IL_3U5F_012, IL_1SI3_001 | IL_2QBG_043, IL_2ZJR_038, IL_1QA6_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_34156.6 | Only in the child motif |
|---|---|---|---|
| IL_12685.1 Compare | IL_3U5F_012 | IL_1SI3_001, IL_2ZI0_001 | IL_3U5F_006 |
| IL_15768.1 Compare | IL_2ZI0_001 | IL_3U5F_012, IL_1SI3_001 | IL_3V2F_025, IL_1GID_006, IL_1GID_013 |
| IL_06177.1 Compare | IL_1SI3_001 | IL_3U5F_012, IL_2ZI0_001 |
- Annotations
-
- Isolated non-canonical cWW contact (1)
- Isolated near basepair (1)
- (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.28 | Avg 0.36 | Max 0.70
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