Motif IL_98882.1 Version IL_98882.1 of this group appears in releases 3.15 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5Y58_001 | 5Y58 | 0.9279 | 1 | X | TLC1 | U | 308 | G | 309 | * | U | 291 | A | 292 | A | 294 | cWW | cWW | |
| 2 | IL_4IOA_023 | 4IOA | 0.6866 | 0 | X | LSU rRNA | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW | |
| 3 | IL_5TBW_077 | 5TBW | 0.5876 | 5 | Intercalated tWH | 1 | LSU rRNA | A | 1901 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW |
| 4 | IL_5Z1I_003 | 5Z1I | 0.0000 | 2 | Decoding loop related | A | RNA (21-mer) | G | 16 | G | 19 | * | C | 7||||8_555 | G | 8||||8_555 | C | 9||||8_555 | cWW | cWW |
| 5 | IL_5Z1I_002 | 5Z1I | 0.0000 | 2 | Decoding loop related | A | RNA (21-mer) | G | 16||||8_555 | G | 19||||8_555 | * | C | 7 | G | 8 | C | 9 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CGC | 2 |
| UG*UAUA | 1 |
| UG*UUA | 1 |
| AGUCGG*CUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*G | 2 |
| *AU | 1 |
| *U | 1 |
| GUCG*UG | 1 |
Release history
| Release | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Decoding loop related (2)
- Intercalated tWH (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.59 | Avg 0.53 | Max 0.93
Coloring options: