Motif IL_98882.2 Version IL_98882.2 of this group appears in releases 3.48 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5Z1I_003 | 5Z1I | 0.0000 | 2 | Decoding loop related | A | RNA (21-mer) | G | 16 | G | 19 | * | C | 7||||8_555 | G | 8||||8_555 | C | 9||||8_555 | cWW | cWW |
| 2 | IL_5Z1I_002 | 5Z1I | 0.0000 | 2 | Decoding loop related | A | RNA (21-mer) | G | 16||||8_555 | G | 19||||8_555 | * | C | 7 | G | 8 | C | 9 | cWW | cWW |
| 3 | IL_5TBW_077 | 5TBW | 0.5876 | 5 | Intercalated tWH | 1 | LSU rRNA | A | 1901 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW |
| 4 | IL_7A0S_062 | 7A0S | 0.5843 | 5 | Intercalated tWH | X | LSU rRNA | A | 1686 | G | 1691 | * | C | 1973 | U | 1974 | U | 1976 | cWW | cWW |
| 5 | IL_7A0S_024 | 7A0S | 0.6612 | 0 | X | LSU rRNA | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW | |
| 6 | IL_5Y58_001 | 5Y58 | 0.9279 | 1 | X | TLC1 | U | 308 | G | 309 | * | U | 291 | A | 292 | A | 294 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CGC | 2 |
| AGUCGG*CUGU | 1 |
| ACUUUG*CUGU | 1 |
| UG*UUA | 1 |
| UG*UAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*G | 2 |
| GUCG*UG | 1 |
| CUUU*UG | 1 |
| *U | 1 |
| *AU | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Intercalated tWH (2)
- (2)
- Decoding loop related (2)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.12 | Avg 0.52 | Max 0.93
Coloring options: