Motif IL_98882.3 Version IL_98882.3 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5Y58_001 | 5Y58 | 0.9279 | 1 | X | TLC1 | U | 308 | G | 309 | * | U | 291 | A | 292 | A | 294 | cWW | cWW | |
| 2 | IL_7A0S_024 | 7A0S | 0.6612 | 0 | X | LSU rRNA | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW | |
| 3 | IL_5TBW_077 | 5TBW | 0.5876 | 5 | Intercalated tWH | 1 | LSU rRNA | A | 1901 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW |
| 4 | IL_5Z1I_002 | 5Z1I | 0.0000 | 2 | Decoding loop related | A | RNA (21-mer) | G | 16||||8_555 | G | 19||||8_555 | * | C | 7 | G | 8 | C | 9 | cWW | cWW |
| 5 | IL_5Z1I_003 | 5Z1I | 0.0000 | 2 | Decoding loop related | A | RNA (21-mer) | G | 16 | G | 19 | * | C | 7||||8_555 | G | 8||||8_555 | C | 9||||8_555 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CGC | 2 |
| UG*UAUA | 1 |
| UG*UUA | 1 |
| AGUCGG*CUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*G | 2 |
| *AU | 1 |
| *U | 1 |
| GUCG*UG | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Decoding loop related (2)
- Intercalated tWH (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.59 | Avg 0.53 | Max 0.93
Coloring options: