Motif IL_99363.2 Version IL_99363.2 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	1-7	3-6	4-5
1	IL_1FJG_003	1FJG	0.2971	2	A	SSU rRNA	C	47	U	49	A	50	G	52	*	U	359	A	360	G	361	cWW		cWW
2	IL_2AW7_003	2AW7	0.2992	2	A	SSU rRNA	C	47	U	49	A	50	C	52	*	G	359	G	360	G	361	cWW	tSs	cWW
3	IL_3J7A_003	3J7A	0.0000	3	A	SSU rRNA	G	42	U	45	A	46	G	48	*	C	437	G	438	C	439	cWW	ntSs	cWW
4	IL_4W23_004	4W23	0.1948	3	2	SSU rRNA	G	41	U	44	A	45	G	47	*	C	479	G	480	C	481	cWW	tSs	cWW
5	IL_4BPP_004	4BPP	0.2935	3	A	SSU rRNA	U	41	U	44	A	45	C	47	*	G	423	A	424	A	425	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUUAAG*CGC	2
CCUAAG*UAG	1
CCUAAC*GGG	1
UAUUAAC*GAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUUAA*G	2
CUAA*A	1
CUAA*G	1
AUUAA*A	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_99363.2	Only in the parent motif
IL_99363.1 Compare	IL_3J7A_003, IL_2AW7_003, IL_4BPP_004, IL_1FJG_003	IL_4W23_004	IL_1VX2_004

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-L-tSS-cWW
Heat map statistics: Min 0.19 | Avg 0.25 | Max 0.46

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Coloring options: Nucleotide numbers

Motif IL_99363.2 Version IL_99363.2 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_99363.2 Version IL_99363.2 of this group appears in releases 1.18 to 1.18

Download

Csv

Json