Motif IL_99363.2 Version IL_99363.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_003 | 1FJG | 0.2971 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | |
| 2 | IL_2AW7_003 | 2AW7 | 0.2992 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | tSs | cWW |
| 3 | IL_3J7A_003 | 3J7A | 0.0000 | 3 | A | SSU rRNA | G | 42 | U | 45 | A | 46 | G | 48 | * | C | 437 | G | 438 | C | 439 | cWW | ntSs | cWW |
| 4 | IL_4W23_004 | 4W23 | 0.1948 | 3 | 2 | SSU rRNA | G | 41 | U | 44 | A | 45 | G | 47 | * | C | 479 | G | 480 | C | 481 | cWW | tSs | cWW |
| 5 | IL_4BPP_004 | 4BPP | 0.2935 | 3 | A | SSU rRNA | U | 41 | U | 44 | A | 45 | C | 47 | * | G | 423 | A | 424 | A | 425 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUAAG*CGC | 2 |
| CCUAAG*UAG | 1 |
| CCUAAC*GGG | 1 |
| UAUUAAC*GAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAA*G | 2 |
| CUAA*A | 1 |
| CUAA*G | 1 |
| AUUAA*A | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_99363.2 | Only in the parent motif |
|---|---|---|---|
| IL_99363.1 Compare | IL_3J7A_003, IL_2AW7_003, IL_4BPP_004, IL_1FJG_003 | IL_4W23_004 | IL_1VX2_004 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-tSS-cWW
- Heat map statistics
- Min 0.19 | Avg 0.25 | Max 0.46
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