Motif IL_99363.1 Version IL_99363.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-7 | 1-8 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_003 | 1FJG | 0.8682 | 1 | A | SSU rRNA | C | 47 | C | 48 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | ||
| 2 | IL_2AW7_003 | 2AW7 | 0.8699 | 1 | A | 16S ribosomal RNA | C | 47 | C | 48 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | tSs | cWW | |
| 3 | IL_1VX2_004 | 1VX2 | 0.2649 | 2 | 2 | 18S ribosomal RNA | G | 41 | A | 42 | U | 43 | A | 45 | G | 47 | * | C | 479 | G | 480 | C | 481 | ncwW | cWW | tSs | cWW |
| 4 | IL_3J7A_003 | 3J7A | 0.0000 | 2 | A | SSU rRNA | G | 42 | A | 43 | U | 44 | A | 46 | G | 48 | * | C | 437 | G | 438 | C | 439 | cWW | ntSs | cWW | |
| 5 | IL_4BPP_004 | 4BPP | 0.2667 | 2 | A | 18S RRNA | U | 41 | A | 42 | U | 43 | A | 45 | C | 47 | * | G | 423 | A | 424 | A | 425 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUAAG*CGC | 2 |
| CCUAAG*UAG | 1 |
| CCUAAC*GGG | 1 |
| UAUUAAC*GAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAA*G | 2 |
| CUAA*A | 1 |
| CUAA*G | 1 |
| AUUAA*A | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_99363.1 | Only in the parent motif |
|---|---|---|---|
| IL_06211.3 Compare | IL_2AW7_003, IL_4BPP_004, IL_1FJG_003 | IL_1VX2_004, IL_3J7A_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_99363.1 | Only in the child motif |
|---|---|---|---|
| IL_99363.2 Compare | IL_3J7A_003, IL_2AW7_003, IL_4BPP_004, IL_1FJG_003 | IL_1VX2_004 | IL_4W23_004 |
- Annotations
-
- (5)
- Basepair signature
- cWW-L-L-tSS-cWW
- Heat map statistics
- Min 0.26 | Avg 0.51 | Max 0.89
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