Motif IL_99373.2 Version IL_99373.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KQY_010 | 4KQY | 0.0000 | 1 | A | SAM-I riboswitch | U | 52||||4_555 | G | 53||||4_555 | A | 55||||4_555 | A | 56||||4_555 | * | U | 69||||4_555 | G | 70||||4_555 | A | 71||||4_555 | cWW | cWW | ||
| 2 | IL_4KQY_005 | 4KQY | 0.0000 | 1 | A | SAM-I riboswitch | U | 52 | G | 53 | A | 55 | A | 56 | * | U | 69 | G | 70 | A | 71 | cWW | cWW | ||
| 3 | IL_4V88_400 | 4V88 | 0.9730 | 0 | A6 | SSU rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | ncSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAA*UGA | 2 |
| CAUG*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*G | 2 |
| AU*G | 1 |
- Annotations
- Basepair signature
- cWW-bif-L-cWW
- Heat map statistics
- Min 0.97 | Avg 0.43 | Max 0.97
Coloring options: