Motif IL_99434.1 Version IL_99434.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QWY_005 | 2QWY | 0.0000 | 0 | B | SAM-II riboswitch | U | 21 | G | 22 | * | C | 43 | U | 44 | A | 45 | cWW | cWW | |
| 2 | IL_4A1B_094 | 4A1B | 0.9428 | 2 | 1 | 26S RRNA | G | 2391 | A | 2393 | * | U | 2969 | A | 2970 | C | 2972 | cWW | cWW | cSH |
| 3 | IL_3U5H_097 | 3U5H | 0.9829 | 2 | 5 | 25S rRNA | G | 2396 | A | 2398 | * | U | 2981 | A | 2982 | C | 2984 | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAA*UACC | 2 |
| UG*CUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AC | 2 |
| *U | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_99434.1 | Only in the parent motif |
|---|---|---|---|
| IL_87608.1 Compare | IL_2QWY_005 | IL_4A1B_094, IL_3U5H_097 | IL_3O58_135, IL_2ZJR_023, IL_3O58_124, IL_3O30_018, IL_1FJG_012 |
Children motifs
| Child motif | Common motif instances | Only in IL_99434.1 | Only in the child motif |
|---|---|---|---|
| IL_46648.1 Compare | IL_2QWY_005, IL_3U5H_097, IL_4A1B_094 | IL_4A1B_114, IL_3V2F_096, IL_2ZJR_092, IL_2QBG_098, IL_2XZM_040, IL_3U5H_078, IL_1S72_087, IL_3U5H_117 |
- Annotations
-
- (3)
- Basepair signature
- 05_cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.45 | Max 0.98
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