Motif IL_87608.1 Version IL_87608.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_012 | 1FJG | 0.8600 | 1 | A | SSU rRNA | A | 274 | G | 275 | * | U | 249 | A | 250 | U | 252 | cWW | cWW |
| 2 | IL_2QWY_005 | 2QWY | 0.0000 | 0 | B | SAM-II riboswitch | U | 21 | G | 22 | * | C | 43 | U | 44 | A | 45 | cWW | cWW |
| 3 | IL_2ZJR_023 | 2ZJR | 0.6370 | 0 | X | LSU rRNA | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW |
| 4 | IL_3O30_018 | 3O30 | 0.9670 | 3 | 1 | 18S ribosomal RNA | U | 345 | G | 346 | * | U | 318 | U | 319 | A | 323 | cWW | ncWW |
| 5 | IL_3O58_124 | 3O58 | 0.9854 | 1 | 1 | 25S ribosomal RNA | G | 2787 | C | 2788 | * | G | 2770 | U | 2771 | C | 2773 | cWW | cWW |
| 6 | IL_3O58_135 | 3O58 | 0.9832 | 1 | 1 | 25S ribosomal RNA | U | 2891 | A | 2892 | * | U | 2909 | A | 2910 | G | 2912 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAGU | 1 |
| UG*CUA | 1 |
| UG*UUA | 1 |
| UG*UUUCGA | 1 |
| GC*GUCC | 1 |
| UA*UAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 2 |
| *AG | 1 |
| *UUCG | 1 |
| *UC | 1 |
| *AA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87608.1 | Only in the parent motif |
|---|---|---|---|
| IL_11363.2 Compare | IL_2QWY_005, IL_1FJG_012 | IL_3O58_135, IL_2ZJR_023, IL_3O58_124, IL_3O30_018 | IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3G78_012, IL_3MOJ_004, IL_1ZX7_001, IL_1S72_079, IL_1T0E_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005 |
| IL_62089.1 Compare | IL_2ZJR_023 | IL_3O58_135, IL_3O58_124, IL_3O30_018, IL_1FJG_012, IL_2QWY_005 | IL_3F1H_096, IL_3F1H_064, IL_2ZJR_092, IL_1S72_087, IL_1S72_062, IL_2ZJR_063 |
Children motifs
| Child motif | Common motif instances | Only in IL_87608.1 | Only in the child motif |
|---|---|---|---|
| IL_80179.1 Compare | IL_1FJG_012 | IL_3O58_135, IL_2ZJR_023, IL_3O58_124, IL_3O30_018, IL_2QWY_005 | IL_3U5H_107, IL_3U5H_078, IL_2XZM_040, IL_3G78_012, IL_2XZM_053, IL_4A1B_069 |
| IL_99434.1 Compare | IL_2QWY_005 | IL_3O58_135, IL_2ZJR_023, IL_3O58_124, IL_3O30_018, IL_1FJG_012 | IL_4A1B_094, IL_3U5H_097 |
| IL_99515.1 Compare | IL_2ZJR_023 | IL_3O58_135, IL_3O58_124, IL_3O30_018, IL_1FJG_012, IL_2QWY_005 | IL_4A1B_114, IL_2ZJR_092, IL_2QBG_098, IL_3U5H_110, IL_3U5H_085, IL_1S72_087, IL_3U5H_117, IL_1S72_062, IL_4A1B_081, IL_3UXR_097 |
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