Motif J3_04858.3 Version J3_04858.3 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 5-8 | 6-7 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5TBW_010 | 5TBW | 0.6968 | 1 | 1 | LSU rRNA | U | 1526 | C | 1527 | G | 1528 | A | 1529 | U | 1530 | C | 1531 | * | G | 1591 | G | 1592 | A | 1594 | U | 1595 | * | A | 1612 | A | 1613 | cWW | ntHS | cWW | cWW |
| 2 | J3_5J7L_043 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | U | 1344 | C | 1345 | G | 1346 | A | 1347 | C | 1348 | C | 1349 | * | G | 1382 | A | 1383 | A | 1384 | A | 1385 | * | U | 1402 | A | 1403 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCGAUC*GGAAU*AA | 1 |
| UCGACC*GAAA*UA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAU*GAA* | 1 |
| CGAC*AA* | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW
- Heat map statistics
- Min 0.70 | Avg 0.35 | Max 0.70
Coloring options: