Motif J3_07996.1 Version J3_07996.1 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | break | 17 | 18 | 19 | 1-19 | 6-17 | 7-15 | 8-14 | 9-13 | 11-12 | 16-17 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_061 | 8P9A | 0.0000 | 2 | AR | LSU rRNA | G | 2754 | C | 2755 | C | 2756 | U | 2757 | A | 2758 | U | 2759 | G | 2761 | A | 2762 | U | 2763 | C | 2764 | C | 2765 | * | G | 2793 | G | 2794 | U | 2795 | G | 2796 | C | 2798 | * | G | 2651 | U | 2652 | C | 2653 | cWW | tHh | tHW | ntHW | cWW | cWW | |
| 2 | J3_4V9F_018 | 4V9F | 0.1657 | 2 | 0 | LSU rRNA | G | 2421 | U | 2422 | C | 2423 | U | 2424 | A | 2425 | C | 2427 | G | 2428 | A | 2429 | A | 2430 | C | 2431 | C | 2432 | * | G | 2459 | A | 2460 | U | 2461 | G | 2462 | C | 2464 | * | G | 2316 | C | 2317 | C | 2318 | cWW | ntWS | tHh | tHW | cBW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUC*GCCUAUCGAUCC*GGUGCC | 1 |
| GCC*GUCUAGCGAACC*GAUGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*CCUAUCGAUC*GUGC | 1 |
| C*UCUAGCGAAC*AUGA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-cWW-F-F-tHH-F-tHW-F-cWW-F-F
- Heat map statistics
- Min 0.17 | Avg 0.08 | Max 0.17
Coloring options: