Motif J3_08394.1 Version J3_08394.1 of this group appears in releases 3.2 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13		14	break		15		16		17		18		19		20	1-20	7-8	11-16	12-18	14-15
1	J3_5J7L_008	5J7L	0.1134	0	AA	SSU rRNA	C	1107	G	1108	C	1109	A	1110	A	1111	C	1112	C	1113	*	G	1187	A	1188	U	1189	G	1190	A	1191	C	1192	G	1193	*	C	1063	G	1064	U	1065	C	1066	A	1067	G	1068	cWW	cWW	tSS	tHW	cWW
2	J3_4LFB_007	4LFB	0.0000	0	A	SSU rRNA	C	1107	G	1108	C	1109	A	1110	A	1111	C	1112	C	1113	*	G	1187	A	1188	C	1189	G	1190	A	1191	C	1192	G	1193	*	C	1063	G	1064	U	1065	C	1066	A	1067	G	1068	cWW	cWW	ntSS	tHW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUCAGCGCAACCGAUGACG	1
CGUCAGCGCAACCGACGACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUCAGCAACAUGAC	1
GUCAGCAACACGAC	1

Release history

Release	3.2	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-02-09	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
Heat map statistics: Min 0.11 | Avg 0.06 | Max 0.11

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Coloring options: Nucleotide numbers

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