#Varna 2DMotifNum NtsInstances
1
  • J3_39238.1
J3_39238.1
  • Basepair signature: cWW-tWH-cWW-tSW-F-F-cWW
  • History status: Exact match
116
2
  • J3_91491.1
J3_91491.1
  • Basepair signature: cWW-F-tWW-tHW-cWW-F-cWW
  • History status: Exact match
116
3
  • J3_28621.1
J3_28621.1
  • Basepair signature: cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
  • History status: Exact match
136
4
  • J3_54393.1
J3_54393.1
  • Basepair signature: cWW-tSH-cSS-tHS-F-cWW-cWW-cWW
  • History status: Exact match
  • C-di-AMP riboswitch (5)
  • 145
    5
    • J3_44724.1
    J3_44724.1
    • Basepair signature: cWW-tSH-F-cWW-tHS-cWW-F
    • History status: Exact match
    125
    6
    • J3_32852.1
    J3_32852.1
    • Basepair signature: cWW-tSH-tHW-F-F-cWW-cWW-F
    • History status: Exact match
    124
    7
    • J3_32601.1
    J3_32601.1
    • Basepair signature: cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
    • History status: Exact match
    124
    8
    • J3_89368.1
    J3_89368.1
    • Basepair signature: cWW-tSH-tHW-F-cWW-tHH-cWW
    • History status: Exact match
  • Kink-turn in J3 (3)
  • 133
    9
    • J3_56052.1
    J3_56052.1
    • Basepair signature: cWW-F-cWW-cWW-F
    • History status: Exact match
    83
    10
    • J3_42157.1
    J3_42157.1
    • Basepair signature: cWW-tSH-tWW-tHW-F-F-cWW-cWW
    • History status: Exact match
    123
    11
    • J3_82365.1
    J3_82365.1
    • Basepair signature: cWW-F-F-F-cWW-cWW-F
    • History status: Exact match
    103
    12
    • J3_11934.1
    J3_11934.1
    • Basepair signature: cWW-F-cWW-F-F-tWW-F-cWW-F
    • History status: Exact match
    133
    13
    • J3_37047.1
    J3_37047.1
    • Basepair signature: cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
    • History status: Exact match
    163
    14
    • J3_83516.1
    J3_83516.1
    • Basepair signature: cWW-F-F-F-tWW-F-tSH-tSS-F-F-F-F-F-cWW-cWW-F-F-F
    • History status: Exact match
    223
    15
    • J3_84189.1
    J3_84189.1
    • Basepair signature: cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
    • History status: Exact match
    133
    16
    • J3_85054.1
    J3_85054.1
    • Basepair signature: cWW-tSH-F-tWW-tHS-cWW-cWW-F
    • History status: Exact match
    143
    17
    • J3_52655.1
    J3_52655.1
    • Basepair signature: cWW-tSH-cWW-F-cWW-cWW
    • History status: Exact match
    113
    18
    • J3_04858.1
    J3_04858.1
    • Basepair signature: cWW-F-cWW-F-F-F-F-F-cWW
    • History status: Exact match
    122
    19
    • J3_41097.1
    J3_41097.1
    • Basepair signature: cWW-cWW-F-cWW-cWW
    • History status: Exact match
  • phi29 pRNA (2)
  • 02
    20
    • J3_82061.1
    J3_82061.1
    • Basepair signature: cWW-F-cWW-F-cWW
    • History status: Exact match
    82
    21
    • J3_08394.1
    J3_08394.1
    • Basepair signature: cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
    • History status: Exact match
    202
    22
    • J3_11279.1
    J3_11279.1
    • Basepair signature: cWW-tSH-tHW-cSH-tHH-cSS-tWW-F-F-cWW-cWW-F
    • History status: Exact match
    192
    23
    • J3_82572.1
    J3_82572.1
    • Basepair signature: cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
    • History status: Exact match
    02
    24
    • J3_65070.1
    J3_65070.1
    • Basepair signature: cWW-tWH-cWW-tSH-F-cWW-F
    • History status: Exact match
    122
    25
    • J3_96372.1
    J3_96372.1
    • Basepair signature: cWW-cSH-cWS-F-F-F-tHW-F-cWW-F-cWW-F
    • History status: Exact match
    02
    26
    • J3_89044.1
    J3_89044.1
    • Basepair signature: cWW-cSW-F-cWW-cSW-cWW-cHW-F-cWW
    • History status: Exact match
    01
    27
    • J3_20650.1
    J3_20650.1
    • Basepair signature: cWW-F-F-F-F-cSS-cWW-cWW-F
    • History status: Exact match
    01
    28
    • J3_98298.1
    J3_98298.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
    • History status: Exact match
    221
    29
    • J3_72804.1
    J3_72804.1
    • Basepair signature: cWW-F-F-F-F-F-tHW-F-F-cWW-cWW-F
    • History status: Exact match
    01
    30
    • J3_06335.1
    J3_06335.1
    • Basepair signature: cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F
    • History status: Exact match
    01
    31
    • J3_20944.1
    J3_20944.1
    • Basepair signature: cWW-F-cHW-F-cWW-tSS-F-cSS-cSH-tWH-tHS-cWW
    • History status: Exact match
    161
    32
    • J3_98484.1
    J3_98484.1
    • Basepair signature: cWW-F-F-tSH-cHW-F-cWW-tSS-cSS-F-cWW-cWW
    • History status: Exact match
    01
    33
    • J3_32857.1
    J3_32857.1
    • Basepair signature: cWW-F-F-F-F-F-cWW-F-cWW-F-F-F-F
    • History status: Exact match
    01
    34
    • J3_75187.1
    J3_75187.1
    • Basepair signature: cWW-cWW-tSH-F-F-F-F-tHS-cWW-cWW
    • History status: Exact match
    01
    35
    • J3_06579.1
    J3_06579.1
    • Basepair signature: cWW-F-tHS-F-tHS-F-cWW-cWW
    • History status: Exact match
    131
    36
    • J3_89737.1
    J3_89737.1
    • Basepair signature: cWW-F-cWW-tSS-cWW-F-cWW-cWW
    • History status: Exact match
  • 5S rRNA (1)
  • 01
    37
    • J3_22198.1
    J3_22198.1
    • Basepair signature: cWW-cSH-F-cWW-cSS-cWW-F
    • History status: Exact match
    01
    38
    • J3_56708.1
    J3_56708.1
    • Basepair signature: cWW-F-cWW-F-tHW-F-F-F-cWW-F-cWW
    • History status: Exact match
    01
    39
    • J3_99170.1
    J3_99170.1
    • Basepair signature: cWW-tSH-tWW-tHW-cWW-F-cWW-F
    • History status: Exact match
    131
    40
    • J3_33851.1
    J3_33851.1
    • Basepair signature: cWW-tSH-F-F-tHS-cWW-cWW-F-F
    • History status: Exact match
    01
    41
    • J3_90744.1
    J3_90744.1
    • Basepair signature: cWW-F-cWW-F-F-cSS-F-F-cWW
    • History status: Exact match
    01
    42
    • J3_25217.1
    J3_25217.1
    • Basepair signature: cWW-F-cWW-F-cWW-F-F
    • History status: Exact match
    01
    43
    • J3_57626.1
    J3_57626.1
    • Basepair signature: cWW-tSS-cWW-F-tHS-F-cWW-cWW
    • History status: Exact match
    131
    44
    • J3_35321.1
    J3_35321.1
    • Basepair signature: cWW-cSS-F-F-F-F-cWW-F-cWW
    • History status: Exact match
    01
    45
    • J3_08465.1
    J3_08465.1
    • Basepair signature: cWW-cWW-F-F-tHW-F-F-tHH-cWW-cWW
    • History status: Exact match
    01
    46
    • J3_45941.1
    J3_45941.1
    • Basepair signature: cWW-cWS-cSH-tWH-F-F-F-F-cWW-cWW-F
    • History status: Exact match
    01
    47
    • J3_25670.1
    J3_25670.1
    • Basepair signature: cWW-F-F-F-cWW-F-F-cWW
    • History status: Exact match
    01
    48
    • J3_59914.1
    J3_59914.1
    • Basepair signature: cWW-F-cWW-F-cWW-F
    • History status: Exact match
    01
    49
    • J3_36387.1
    J3_36387.1
    • Basepair signature: cWW-F-F-F-tWW-tHW-tHW-cWW-F-F-cWW
    • History status: Exact match
    01
    50
    • J3_82541.1
    J3_82541.1
    • Basepair signature: cWW-F-cWW-F-F-cSW-F-cWW
    • History status: Exact match
    121
    51
    • J3_47248.1
    J3_47248.1
    • Basepair signature: cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
    • History status: Exact match
    01
    52
    • J3_93637.1
    J3_93637.1
    • Basepair signature: cWW-cWW-F-F-F-F-F-cWW-cWW-F-F
    • History status: Exact match
    01
    53
    • J3_28366.1
    J3_28366.1
    • Basepair signature: cWW-F-cWW-F-F-F-cWW-F-cWW
    • History status: Exact match
    131
    54
    • J3_60034.1
    J3_60034.1
    • Basepair signature: cWW-F-F-F-cHW-F-cWW-tSS-F-cSS-F-F-tWH-F-tHS-F-cWW-F-F
    • History status: Exact match
    01
    55
    • J3_36499.1
    J3_36499.1
    • Basepair signature: cWW-tSS-tSH-tHW-tHS-cWW-cWW-F
    • History status: Exact match
    01
    56
    • J3_47707.1
    J3_47707.1
    • Basepair signature: cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
    • History status: Exact match
    01
    57
    • J3_94515.1
    J3_94515.1
    • Basepair signature: cWW-tWW-F-cWW-F-tHS-F-cWW
    • History status: Exact match
    131
    58
    • J3_64069.1
    J3_64069.1
    • Basepair signature: cWW-tHS-F-F-F-cWW-cWW-F-F
    • History status: Exact match
    01
    59
    • J3_16201.1
    J3_16201.1
    • Basepair signature: cWW-F-F-tWH-cWW-F-tHS-F-cWW
    • History status: Exact match
    141
    60
    • J3_48314.1
    J3_48314.1
    • Basepair signature: cWW-cWW-F-cWW-F-cWW-F
    • History status: Exact match
    01
    61
    • J3_94652.1
    J3_94652.1
    • Basepair signature: cWW-F-F-F-F-F-cWW-cWW
    • History status: Exact match
    01
    62
    • J3_30104.1
    J3_30104.1
    • Basepair signature: cWW-F-F-cWW-cWW
    • History status: Exact match
    01
    63
    • J3_37410.1
    J3_37410.1
    • Basepair signature: cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
    • History status: Exact match
    181
    64
    • J3_18709.1
    J3_18709.1
    • Basepair signature: cWW-F-tWW-cSH-cWW-cWW-F
    • History status: Exact match
    121
    65
    • J3_51910.1
    J3_51910.1
    • Basepair signature: cWW-F-cWW-tWS-F-F-cWW-cWW
    • History status: Exact match
    01
    66
    • J3_32030.1
    J3_32030.1
    • Basepair signature: cWW-tWH-F-F-cWW-tHS-F-F-cWW-F
    • History status: Exact match
    01
    67
    • J3_65990.1
    J3_65990.1
    • Basepair signature: cWW-tHW-F-F-cWW-F-F-F-cWW-F
    • History status: Exact match
    01
    68
    • J3_38446.1
    J3_38446.1
    • Basepair signature: cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
    • History status: Exact match
    01
    69
    • J3_19286.1
    J3_19286.1
    • Basepair signature: cWW-F-F-tSH-F-cWW-F-F-F-cWW-F
    • History status: Exact match
    01
    70
    • J3_97609.1
    J3_97609.1
    • Basepair signature: cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
    • History status: Exact match
    01
    71
    • J3_32471.1
    J3_32471.1
    • Basepair signature: cWW-cSW-tSS-F-F-cWW-F-cWW
    • History status: Exact match
  • 5S rRNA (1)
  • 131
    72
    • J3_69441.1
    J3_69441.1
    • Basepair signature: cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
    • History status: Exact match
    01
    73
    • J3_02067.1
    J3_02067.1
    • Basepair signature: cWW-tSS-F-F-F-cWW-cWW-F-F
    • History status: Exact match
    131
    74
    • J3_38616.1
    J3_38616.1
    • Basepair signature: cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
    • History status: Exact match
    01
    75
    • J3_88420.1
    J3_88420.1
    • Basepair signature: cWW-F-F-F-F-tSS-cWW-cWW
    • History status: Exact match
    111
    76
    • J3_19431.1
    J3_19431.1
    • Basepair signature: cWW-F-cWW-tSS-F-cWW
    • History status: Exact match
    91
    77
    • J3_52917.1
    J3_52917.1
    • Basepair signature: cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
    • History status: Exact match
    121
    78
    • J3_98102.1
    J3_98102.1
    • Basepair signature: cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
    • History status: Exact match
    151
    79
    • J3_72575.1
    J3_72575.1
    • Basepair signature: cWW-cWW-F-cWW-cSS-cWW-F-cWW
    • History status: Exact match
    01

    Coloring options:


    Exact match 79;

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