Motif J3_11066.1 Version J3_11066.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-10 | 1-11 | 4-10 | 5-6 | 7-8 | 9-11 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5TBW_006 | 5TBW | 0.0000 | 3 | 1 | LSU rRNA | C | 1092 | A | 1093 | U | 1096 | G | 1097 | A | 1098 | * | U | 986 | U | 987 | * | A | 1062 | G | 1063 | A | 1064 | G | 1066 | ntWW | ncWW | cWW | cWW | csS | |
| 2 | J3_8C3A_051 | 8C3A | 0.2533 | 3 | 1 | LSU rRNA | C | 1088 | A | 1089 | U | 1092 | G | 1093 | A | 1094 | * | U | 982 | U | 983 | * | A | 1058 | G | 1059 | A | 1060 | G | 1062 | cWW | cWH | cWW | cWW | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UU*AGAAG*CAUUUGA | 1 |
| UU*AGAAG*CAAUUGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GAA*AUUUG | 1 |
| *GAA*AAUUG | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Heat map statistics
- Min 0.25 | Avg 0.13 | Max 0.25
Coloring options: