J3_8C3A_050

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GAGGACUGCG*CUAGGA

Length

18 nucleotides

Bulged bases

8C3A|1|1|U|605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_15033.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8C3A|1|1|U|497
8C3A|1|1|C|498
*
8C3A|1|1|G|586
8C3A|1|1|A|587
8C3A|1|1|G|588
8C3A|1|1|G|589
8C3A|1|1|A|590
8C3A|1|1|C|591
8C3A|1|1|U|592
8C3A|1|1|G|593
8C3A|1|1|C|594
8C3A|1|1|G|595
*
8C3A|1|1|C|604
8C3A|1|1|U|605
8C3A|1|1|A|606
8C3A|1|1|G|607
8C3A|1|1|G|608
8C3A|1|1|A|609

Current chains

Chain 1

25S

Nearby chains

Chain AF

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-B

Chain n

60S ribosomal protein L6

Chain o

60S ribosomal protein L7-A