J3_4QK9_001
3D structure
- PDB id
- 4QK9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermovirga lienii c-di-AMP riboswitch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- UGAAUC*GUAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- C-di-AMP riboswitch
- Broad Annotation
- No text annotation
- Motif group
- J3_15893.1
- Basepair signature
- cWW-tSH-cSS-tHS-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4QK9|1|A|U|47
4QK9|1|A|G|48
4QK9|1|A|A|49
4QK9|1|A|A|50
4QK9|1|A|U|51
4QK9|1|A|C|52
*
4QK9|1|A|G|65
4QK9|1|A|U|66
4QK9|1|A|A|67
4QK9|1|A|G|68
*
4QK9|1|A|C|87
4QK9|1|A|G|88
4QK9|1|A|A|89
4QK9|1|A|A|90
Current chains
- Chain A
- C-di-AMP riboswitch
Nearby chains
No other chains within 10ÅColoring options: