J3_8C3A_054

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8C3A|1|1|C|1627
8C3A|1|1|A|1628
*
8C3A|1|1|U|1637
8C3A|1|1|A|1638
8C3A|1|1|A|1639
8C3A|1|1|C|1640
8C3A|1|1|U|1641
*
8C3A|1|1|A|1806
8C3A|1|1|G|1807

Current chains

Chain 1

25S

Nearby chains

Chain AA

60S ribosomal protein L27

Chain AH

60S ribosomal protein L34-B

Chain AL

60S ribosomal protein L38