3-way Junction Loop Motif Atlas Release 3.86

#	Motif	Num Nts	Instances
1	J3_28621.3 View exemplar Basepair signature: cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW History status: Exact match	0	7
2	J3_39238.4 View exemplar Basepair signature: cWW-tWH-cWW-tSW-F-F-cWW History status: Exact match	11	7
3	J3_91491.4 View exemplar Basepair signature: cWW-F-tWW-tHW-cWW-F-cWW History status: Exact match	11	7
4	J3_44724.4 View exemplar Basepair signature: cWW-tSH-F-cWW-tHS-cWW-F History status: Exact match	12	6
5	J3_37047.3 View exemplar Basepair signature: cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW History status: Exact match	0	5
6	J3_42157.3 View exemplar Basepair signature: cWW-tSH-tWW-tHW-F-F-cWW-cWW History status: Exact match	0	5
7	J3_15893.1 View exemplar Basepair signature: cWW-tSH-cSS-tHS-F-cWW-cWW-cWW History status: Exact match C-di-AMP riboswitch (3)	0	5
8	J3_32601.3 View exemplar Basepair signature: cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW History status: Exact match	12	4
9	J3_65070.3 View exemplar Basepair signature: cWW-tWH-cWW-tSH-F-cWW-F History status: Exact match	12	4
10	J3_82365.2 View exemplar Basepair signature: cWW-F-F-F-cWW-cWW History status: Exact match	0	4
11	J3_32852.3 View exemplar Basepair signature: cWW-tSH-tHW-F-F-cWW-cWW-F History status: Exact match	12	4
12	J3_52655.2 View exemplar Basepair signature: cWW-tSH-cWW-F-cWW-cWW History status: Exact match	0	4
13	J3_83516.2 View exemplar Basepair signature: cWW-F-F-F-tWW-F-tSH-tSS-F-F-F-F-F-cWW-cWW-F-F-F History status: Exact match	0	4
14	J3_56052.2 View exemplar Basepair signature: cWW-F-cWW-cWW-F History status: Exact match	8	4
15	J3_11934.2 View exemplar Basepair signature: cWW-F-cWW-F-F-tWW-F-cWW-F History status: Exact match	13	4
16	J3_85054.2 View exemplar Basepair signature: cWW-tSH-F-tWW-tHS-cWW-cWW-F History status: Exact match	0	4
17	J3_08394.2 View exemplar Basepair signature: cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F History status: Exact match	0	3
18	J3_89368.3 View exemplar Basepair signature: cWW-tSH-tHW-F-cWW-tHH-cWW History status: Exact match Kink-turn in J3 (1)	13	3
19	J3_82061.2 View exemplar Basepair signature: cWW-F-cWW-F-cWW History status: Exact match	8	3
20	J3_11279.2 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tHH-cSS-tWW-tHH-F-F-cWW-cWW-F History status: Exact match	19	3
21	J3_84625.2 View exemplar Basepair signature: cWW-F-cWW-F-F-F-cWW-F-cWW History status: Exact match	13	3
22	J3_04858.2 View exemplar Basepair signature: cWW-F-cWW-F-F-F-F-F-cWW History status: Exact match	12	3
23	J3_95952.1 View exemplar Basepair signature: cWW-tHS-F-F-F-cWW-cWW History status: Exact match	11	2
24	J3_16623.1 View exemplar Basepair signature: cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW History status: Exact match	13	2
25	J3_88489.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F History status: Exact match	0	2
26	J3_75993.1 View exemplar Basepair signature: cWW-tWH-F-F-tHS-cWW-cWW-cWW-F History status: Exact match	0	2
27	J3_18654.1 View exemplar Basepair signature: cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F History status: Exact match	0	2
28	J3_96372.1 View exemplar Basepair signature: cWW-cSH-cWS-F-F-F-tHW-F-cWW-F-cWW-F History status: Exact match	0	2
29	J3_19256.1 View exemplar Basepair signature: cWW-F-F-F-cWW-F-F-cWW-F History status: Exact match	0	2
30	J3_08462.1 View exemplar Basepair signature: cWW-F-cWW-tSS-F-cWW History status: Exact match	9	2
31	J3_90256.1 View exemplar Basepair signature: cWW-cWS-F-F-F-F-F-F-cWW-F-tHS-F-cWW-F History status: Exact match	0	2
32	J3_97921.1 View exemplar Basepair signature: cWW-F-F-tSH-tWH-F-cWW-F-cWW History status: Exact match	14	2
33	J3_41097.1 View exemplar Basepair signature: cWW-cWW-F-cWW-cWW History status: Exact match phi29 pRNA (2)	0	2
34	J3_82572.1 View exemplar Basepair signature: cWW-tSH-tWW-F-cWW-tHW-F-F-cWW History status: Exact match	0	2
35	J3_10154.1 View exemplar Basepair signature: cWW-tSH-tWW-tHW-cWW-F-cWW-F History status: Exact match	0	2
36	J3_23622.1 View exemplar Basepair signature: cWW-tWW-tWW-F-cWW-F-cWW History status: Exact match	0	2
37	J3_54972.1 View exemplar Basepair signature: cWW-tWW-F-cWW-F-tHS-F-cWW History status: Exact match	0	2
38	J3_98597.1 View exemplar Basepair signature: cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW History status: Exact match	0	2
39	J3_23680.1 View exemplar Basepair signature: cWW-F-tHS-F-tHS-F-cWW-cWW History status: Exact match	0	2
40	J3_04260.1 View exemplar Basepair signature: cWW-F-F-F-F-F-cWW-cWW History status: Exact match	0	2
41	J3_98985.1 View exemplar Basepair signature: cWW-F-cWW-F-F-cSW-F-cWW History status: Exact match	12	2
42	J3_24416.1 View exemplar Basepair signature: cWW-F-F-tWH-cWW-F-tHS-F-cWW History status: Exact match	14	2
43	J3_13944.1 View exemplar Basepair signature: cWW-F-F-tSS-F-F-cWW-cWW History status: Exact match	13	2
44	J3_25670.1 View exemplar Basepair signature: cWW-F-F-F-cWW-F-F-cWW History status: Exact match	11	1
45	J3_58453.1 View exemplar Basepair signature: cWW-cWH-F-cWW-tWS-F-F-cWW-F History status: Exact match	0	1
46	J3_06335.1 View exemplar Basepair signature: cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F History status: Exact match	0	1
47	J3_75187.1 View exemplar Basepair signature: cWW-cWW-tSH-F-F-F-F-tHS-cWW-cWW History status: Exact match	0	1
48	J3_47376.1 View exemplar Basepair signature: cWW-F-F-cWS-cWW-F-cWW History status: Exact match	0	1
49	J3_59914.1 View exemplar Basepair signature: cWW-F-cWW-F-cWW-F History status: Exact match	0	1
50	J3_96170.1 View exemplar Basepair signature: cWW-cSH-cWS-tHS-cWH-F-F-cWW-F-tHS-F-cWW-F History status: Exact match	0	1
51	J3_38151.1 View exemplar Basepair signature: cWW-F-F-F-cWW-cWW-F History status: Exact match	0	1
52	J3_47707.1 View exemplar Basepair signature: cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F History status: Exact match	0	1
53	J3_89044.1 View exemplar Basepair signature: cWW-cSW-F-cWW-cSW-cWW-cHW-F-cWW History status: Exact match	0	1
54	J3_30104.1 View exemplar Basepair signature: cWW-F-F-cWW-cWW History status: Exact match	0	1
55	J3_60034.1 View exemplar Basepair signature: cWW-F-F-F-cHW-F-cWW-tSS-F-cSS-F-F-tWH-F-tHS-F-cWW-F-F History status: Exact match	0	1
56	J3_08408.1 View exemplar Basepair signature: cWW-F-F-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW History status: Exact match	0	1
57	J3_38446.1 View exemplar Basepair signature: cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F History status: Exact match	17	1
58	J3_79305.1 View exemplar Basepair signature: cWW-cSH-cWW-cWH-F-tSW-F-F-F-F-F-cWW-cWW-F History status: Exact match	19	1
59	J3_48314.1 View exemplar Basepair signature: cWW-cWW-F-cWW-F-cWW-F History status: Exact match	0	1
60	J3_32030.1 View exemplar Basepair signature: cWW-tWH-F-F-cWW-tHS-F-F-cWW-F History status: Exact match	0	1
61	J3_64069.1 View exemplar Basepair signature: cWW-tHS-F-F-F-cWW-cWW-F-F History status: Exact match	0	1
62	J3_96459.1 View exemplar Basepair signature: cWW-F-cHW-F-cWW-tSS-F-cSS-F-F-tWH-F-tHS-F-cWW-cSH History status: Exact match	0	1
63	J3_38616.1 View exemplar Basepair signature: cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW History status: Exact match	0	1
64	J3_19286.1 View exemplar Basepair signature: cWW-F-F-tSH-F-cWW-F-F-F-cWW-F History status: Exact match	0	1
65	J3_50081.1 View exemplar Basepair signature: cWW-cSS-cWW-tSS-cWW-F-cWW-F History status: Exact match	0	1
66	J3_89737.1 View exemplar Basepair signature: cWW-F-cWW-tSS-cWW-F-cWW-cWW History status: Exact match 5S rRNA (1)	0	1
67	J3_97609.1 View exemplar Basepair signature: cWW-tSH-tHW-F-cWW-tHH-F-cWW-F History status: Exact match	0	1
68	J3_08465.1 View exemplar Basepair signature: cWW-cWW-F-F-tHW-F-F-tHH-cWW-cWW History status: Exact match	0	1
69	J3_20650.1 View exemplar Basepair signature: cWW-F-F-F-F-cSS-cWW-cWW-F History status: Exact match	0	1
70	J3_51910.1 View exemplar Basepair signature: cWW-F-cWW-tWS-F-F-cWW-cWW History status: Exact match	0	1
71	J3_00458.1 View exemplar Basepair signature: cWW-F-F-cSS-F-tWH-cSS-F-tHW-F-F-cWW-F-F-cWW History status: Exact match	0	1
72	J3_65990.1 View exemplar Basepair signature: cWW-tHW-F-F-cWW-F-F-F-cWW-F History status: Exact match	0	1
73	J3_10118.1 View exemplar Basepair signature: cWW-F-cWW-F-cWW History status: Exact match	0	1
74	J3_22198.1 View exemplar Basepair signature: cWW-cSH-F-cWW-cSS-cWW-F History status: Exact match	0	1
75	J3_90744.1 View exemplar Basepair signature: cWW-F-cWW-F-F-cSS-F-F-cWW History status: Exact match	13	1
76	J3_02167.1 View exemplar Basepair signature: cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW History status: Exact match	0	1
77	J3_32857.1 View exemplar Basepair signature: cWW-F-F-F-F-F-cWW-F-cWW-F-F-F-F History status: Exact match	0	1
78	J3_67213.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F History status: Exact match	0	1
79	J3_98484.1 View exemplar Basepair signature: cWW-F-F-tSH-cHW-F-cWW-tSS-cSS-F-cWW-cWW History status: Exact match	0	1
80	J3_41596.1 View exemplar Basepair signature: cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-F-F-F History status: Exact match	0	1
81	J3_03367.1 View exemplar Basepair signature: cWW-tWH-cWW-tSH-F-cWW History status: Exact match	0	1
82	J3_33851.1 View exemplar Basepair signature: cWW-tSH-F-F-tHS-cWW-cWW-F-F History status: Exact match	0	1
83	J3_68440.1 View exemplar Basepair signature: cWW-cWW-F-F-F-cWW-F-F-cWW-F-F-F-F-F-F History status: Exact match	0	1
84	J3_93059.1 View exemplar Basepair signature: cWW-tWH-cWW-tSH-F-cWW-cWW History status: Exact match	0	1
85	J3_35321.1 View exemplar Basepair signature: cWW-cSS-F-F-F-F-cWW-F-cWW History status: Exact match	12	1
86	J3_69441.1 View exemplar Basepair signature: cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW History status: Exact match	0	1
87	J3_56708.1 View exemplar Basepair signature: cWW-F-cWW-F-tHW-F-F-F-cWW-F-cWW History status: Exact match	0	1
88	J3_93637.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-cWW-cWW-F-F History status: Exact match	0	1
89	J3_36387.1 View exemplar Basepair signature: cWW-F-F-F-tWW-tHW-tHW-cWW-F-F-cWW History status: Exact match	0	1
90	J3_72575.1 View exemplar Basepair signature: cWW-cWW-F-cWW-cSS-cWW-F-cWW History status: Exact match	0	1
91	J3_45941.1 View exemplar Basepair signature: cWW-cWS-cSH-tWH-F-F-F-F-cWW-cWW-F History status: Exact match	0	1
92	J3_86619.1 View exemplar Basepair signature: cWW-F-F-tHW-cWW-F-cWW-F-F History status: Exact match	13	1
93	J3_25217.1 View exemplar Basepair signature: cWW-F-cWW-F-cWW-F-F History status: Exact match	0	1
94	J3_58090.1 View exemplar Basepair signature: cWW-tWW-F-F-F-cWW-F-F-cWW History status: Exact match	0	1
95	J3_94652.1 View exemplar Basepair signature: cWW-F-F-F-F-F-cWW-cWW History status: Exact match	0	1
96	J3_05216.1 View exemplar Basepair signature: cWW-tSS-cSS-cWH-cWW-F-tSH-tHS-cWW History status: Exact match	0	1
97	J3_36499.1 View exemplar Basepair signature: cWW-tSS-tSH-tHW-tHS-cWW-cWW-F History status: Exact match	0	1
98	J3_72804.1 View exemplar Basepair signature: cWW-F-F-F-F-F-tHW-F-F-cWW-cWW-F History status: Exact match	16	1
99	J3_47248.1 View exemplar Basepair signature: cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F History status: Exact match	0	1
100	J3_86907.1 View exemplar Basepair signature: cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F History status: Exact match	26	1