#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 10break 11 121-21-124-75-610-11
1 J3_8C3A_0608C3A0.159224 5.8S rRNAG58A59A61G63U64*A96A97U98C99U100*A44C45ncSscWWcWWcWWcWW
2 J3_5TBW_0715TBW0.126324 5.8S rRNAG58A59A61G63U64*A96A97U98C99U100*A44C45ncSscWWcWWcWWcWW
3 J3_8VTW_0398VTW0.102821A LSU rRNAG70A71A73G75C76*G110A111U112G113U114*A56C57ncSscWWcWWcWWcWW
4 J3_4V9F_0144V9F0.057120 LSU rRNAG66A67A69G71C72*G105A106U107U108U109*A52C53ncSscWWcWWcWWcWW
5 J3_5J7L_0375J7L0.00002DA LSU rRNAG70A71A73G75C76*G110A111U112U113U114*A56C57ncSscWWcWWcWWcWW
6 J3_7A0S_0027A0S0.17202X LSU rRNAG69A70A72G74C75*G108A109U110G111U112*A55C56cWWncWWcWWcWW
7 J3_4WF9_0134WF90.29432X LSU rRNAG70A71A73G75C76*G109A110U111U112U113*A56C57cSHcWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AC*GAUACGU*AAUCU2
AC*GAUAAGC*GAUUU2
AC*GAUAAGC*GAUGU1
AC*GAAAAGC*GAUGU1
AC*GAUAUGC*GAUUU1
Non-Watson-Crick part of the motif
SequenceCounts
*AUACG*AUC2
*AUAAG*AUU2
*AUAAG*AUG1
*AAAAG*AUG1
*AUAUG*AUU1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Basepair signature
    cWW-F-cWW-F-cWW-F-cWW-F
    Heat map statistics
    Min 0.06 | Avg 0.18 | Max 0.34
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