J3_8C3A_060

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

8C3A|1|4|U|60, 8C3A|1|4|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38265.2

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

8

Unit IDs

8C3A|1|4|A|44
8C3A|1|4|C|45
*
8C3A|1|4|G|58
8C3A|1|4|A|59
8C3A|1|4|U|60
8C3A|1|4|A|61
8C3A|1|4|C|62
8C3A|1|4|G|63
8C3A|1|4|U|64
*
8C3A|1|4|A|96
8C3A|1|4|A|97
8C3A|1|4|U|98
8C3A|1|4|C|99
8C3A|1|4|U|100

Current chains

Chain 4

5.8S

Nearby chains

Chain 8

60S ribosomal protein L25

Chain AI

Ribosomal protein L29

Chain AK

60S ribosomal protein L37-B

Chain AM

60S ribosomal protein L39