3D structure

PDB id
8B0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
8B0X|1|A|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8B0X_031 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.0966
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8B0X|1|A|U|1116
8B0X|1|A|A|1117
8B0X|1|A|U|1118
*
8B0X|1|A|A|1155
8B0X|1|A|G|1156
8B0X|1|A|A|1157
8B0X|1|A|C|1158
8B0X|1|A|U|1159
8B0X|1|A|G|1160
8B0X|1|A|C|1161
*
8B0X|1|A|G|1175
8B0X|1|A|A|1176
8B0X|1|A|G|1177
8B0X|1|A|G|1178
8B0X|1|A|A|1179
8B0X|1|A|A|1180
8B0X|1|A|G|1181
8B0X|1|A|G|1182
8B0X|1|A|U|1183
8B0X|1|A|G|1184

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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